Browse Element(s) Details


Os.8213.1.S1_at

Description gb:AK065810.1
DB_XREF= gi:32975828
TID=Os.8213.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039B05, full insert sequence.
FL= gb:AK067248.1 gb:AK060855.1 gb:AK065810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23760Os.46314.3.S1_at2/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.2.S1_s_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.24844.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23770Os.17577.3.S1_at10/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23770Os.17577.1.S1_x_at9/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23780OsAffx.7176.1.S1_at10/1111+12950614..12952231hypothetical protein
LOC_Os11g23790Os.8213.1.S1_at11/1111+12960269..12966519expressed protein
LOC_Os11g23800OsAffx.31892.1.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23800OsAffx.31892.5.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23810OsAffx.22947.2.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810Os.47463.1.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810OsAffx.22947.1.S1_x_at3/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810Os.14491.2.S1_x_at2/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23810OsAffx.22947.3.S1_x_at1/1111+12974240..12979722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23820NANA11+12981501..12984806transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23830OsAffx.22947.5.S1_x_at2/1111+12985630..12988332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23830OsAffx.22947.3.S1_x_at1/1111+12985630..12988332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23830OsAffx.22947.1.S1_x_at1/1111+12985630..12988332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23840Os.46715.1.S1_x_at1/1111+12990478..12992319retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8213.1.S1_at--1111--2071Chr11:12960818..12960842 (25 bp)
ACATTCACTGCCCTGTTCAAGTATA
LOC_Os11g23790
Os.8213.1.S1_at--1106--251Chr11:12960796..12960820 (25 bp)
ATATGAACTCCCTAGATTCTTGGCC
LOC_Os11g23790
Os.8213.1.S1_at--366--6551Chr11:12960782..12960806 (25 bp)
GATTCTTGGCCCTTTTAAGCTTATG
LOC_Os11g23790
Os.8213.1.S1_at--391--3671Chr11:12960763..12960787 (25 bp)
CTTATGATATTACAGCCTAGTGGGC
LOC_Os11g23790
Os.8213.1.S1_at--317--7951Chr11:12960734..12960758 (25 bp)
GGATCATGGTATGGACCTTAGTCTT
LOC_Os11g23790
Os.8213.1.S1_at--700--6171Chr11:12960661..12960685 (25 bp)
GAGGAACTTGAGTGGCCATTACTAA
LOC_Os11g23790
Os.8213.1.S1_at--777--3291Chr11:12960594..12960618 (25 bp)
CAAAGGCCAATGGTGATCTCTGGGT
LOC_Os11g23790
Os.8213.1.S1_at--966--171Chr11:12960488..12960512 (25 bp)
ATTTAGCTTAGCTTCCTACAATGGA
LOC_Os11g23790
Os.8213.1.S1_at--513--271Chr11:12960404..12960428 (25 bp)
ATATGTATCGCCCTTTTCCATTTTG
LOC_Os11g23790
Os.8213.1.S1_at--579--171Chr11:12960385..12960409 (25 bp)
ATTTTGCAGGATTTTCTTTGTCTCA
LOC_Os11g23790
Os.8213.1.S1_at--49--5411Chr11:12960332..12960356 (25 bp)
GAAGCCAGGGATACTTTTTACCAGT
LOC_Os11g23790
Target Sequence 
ACATTCACTGCCCTGTTCAAGTATATGAACTCCCTAGATTCTTGGCCCTTTTAAGCTTATGATATTACAGCCTAGTGGGC
AAAAGGATCATGGTATGGACCTTAGTCTTGCTGCAAAAACTTATTGATTTTTTTTNACCAGTGAATGGCAAATCTTGGAG
GAACTTGAGTGGCCATTACTAATATAGTTAAAAATAGAAGCAGAAGAAATGATGTCTGGGCATGCAAAGGCCAATGGTGA
TCTCTGGGTGGAATGTAATATTTATACNCNCATTTAGTGCAGAAGTAAAGTAAGAGCTTCGAAAAGCAAATAGTCAAATG
GACACAGTGATATTTAGCTTAGCTTCCTACAATGGATATTAAGAGAGTTTAGCTTACTTTTGAGTGAAATAGAAGATGGC
CTTAGATCTAACATGATATGTATCGCCCTTTTCCATTTTGCAGGATTTTCTTTGTCTCAAAATATATTTTCAAATTTTAT
ATTGCTGGAAGCCAGGGATACTTTTTACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis