Browse Element(s) Details


OsAffx.31403.1.S1_at

Description tigr:9639.m03694
TID=OsAffx.31403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase homolog F8F16.40 - Arabidopsis thaliana, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4037011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40330OsAffx.31401.1.S1_at10/1111+23539438..23541288hypothetical protein
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31403.1.S1_at--405--3531Chr11:23566329..23566353 (25 bp)
CATGCATGCTCAGCGATTTCGGAAT
LOC_Os11g40370
OsAffx.31403.1.S1_at--1102--3111Chr11:23566284..23566308 (25 bp)
AATTTGGACGGCTTATCACTGACCC
LOC_Os11g40370
OsAffx.31403.1.S1_at--544--1251Chr11:23566248..23566272 (25 bp)
AGTTGGATGTATCTGCTCTGGGCAT
LOC_Os11g40370
OsAffx.31403.1.S1_at--434--8651Chr11:23566230..23566254 (25 bp)
TGGGCATCGTGTTGCTTCAGCTAGT
LOC_Os11g40370
OsAffx.31403.1.S1_at--923--5451Chr11:23566174..23566198 (25 bp)
GAACGTGTGATCTACTATCTGGGAG
LOC_Os11g40370
OsAffx.31403.1.S1_at--332--9211Chr11:23565995..23566019 (25 bp)
TCCAAGCCTCGCCACAGAAGTTTTG
LOC_Os11g40370
OsAffx.31403.1.S1_at--1156--5331Chr11:23565979..23566003 (25 bp)
GAAGTTTTGCCCCAGATTGAGTCAA
LOC_Os11g40370
OsAffx.31403.1.S1_at--861--6931Chr11:23565947..23565971 (25 bp)
GTAGTGCCTCTCATACTTAAGTGGT
LOC_Os11g40370
OsAffx.31403.1.S1_at--409--7491Chr11:23565927..23565951 (25 bp)
GTGGTGACGGCTTCAAGTACTGTGT
LOC_Os11g40370
OsAffx.31403.1.S1_at--619--5211Chr11:23565806..23565830 (25 bp)
GAATTAACATTTCCTGTACCTAGTG
LOC_Os11g40370
OsAffx.31403.1.S1_at--1135--6971Chr11:23565791..23565815 (25 bp)
GTACCTAGTGCACCACCAGTTAATA
LOC_Os11g40370
Target Sequence 
CATGCATGCTCAGCGATTTCGGAATGTGTTATCTGTATTCGAAAGAATTTGGACGGCTTATCACTGACCCTTGCAAGATT
CAGTTGGATGTATCTGCTCTGGGCATCGTGTTGCTTCAGCTAGTTACAGGGAAACTAGATGCAAATGGTTTAAGAGAACG
TGTGATCTACTATCTGGGAGATGCTAAGGGGTTCTACAAGAAAACTTCATCGCAGCAAAGAAAAATCCTAGAGAAGATTG
TGAATCTTGAGTTGAAAACAGACAGAACATCAGAAGATGTTGCCAGGATGTTATTCTTGGGATTGAGGTGCAGCGATCCA
ATATCGAAAAATCATCCAAGCCTCGCCACAGAAGTTTTGCCCCAGATTGAGTCAATGAAGAAGTAGTGCCTCTCATACTT
AAGTGGTGACGGCTTCAAGTACTGTGTGATGAGGAGGTTGGCCAATATATGGTTTCTTCAAGAAATGGAAAAGAACATGT
CATTGGACTTCTATGTAATCTATTGTTGTTAAGTTCAACTCTTGAATTAACATTTCCTGTACCTAGTGCACCACCAGTTA
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis