Browse Element(s) Details


OsAffx.31405.1.S1_at

Description tigr:9639.m03698
TID=OsAffx.31405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein
LOC_Os11g40430OsAffx.31406.1.S1_at11/1111+23600608..23604943Protein kinase domain containing protein, expressed
LOC_Os11g40439NANA11+23614246..23615924NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31405.1.S1_at--1064--1411Chr11:23588635..23588659 (25 bp)
AGAAAGCTCTTGTTCCAGACGCTCA
LOC_Os11g40410
OsAffx.31405.1.S1_at--239--8811Chr11:23588625..23588649 (25 bp)
TGTTCCAGACGCTCATGACATGAAT
LOC_Os11g40410
OsAffx.31405.1.S1_at--691--9771Chr11:23588569..23588593 (25 bp)
TAATGGCCAATGCACTCATCGTCAA
LOC_Os11g40410
OsAffx.31405.1.S1_at--215--5411Chr11:23588459..23588483 (25 bp)
GAAGCTCATGCCGAGAACCTCAAGT
LOC_Os11g40410
OsAffx.31405.1.S1_at--169--1651Chr11:23588429..23588453 (25 bp)
AGCGAGTTCATAACCGTCATCTGGG
LOC_Os11g40410
OsAffx.31405.1.S1_at--39--5051Chr11:23588345..23588369 (25 bp)
GCAGAGTCTGGGAACAGCACTTTTC
LOC_Os11g40410
OsAffx.31405.1.S1_at--692--1491Chr11:23588330..23588354 (25 bp)
AGCACTTTTCTGGATTGGCTAACCA
LOC_Os11g40410
OsAffx.31405.1.S1_at--398--5931Chr11:23588305..23588329 (25 bp)
GAGCAGTGATGTAGCAGATACCCAT
LOC_Os11g40410
OsAffx.31405.1.S1_at--287--311Chr11:23588288..23588312 (25 bp)
ATACCCATGTTCAGGAGGCTGGTCC
LOC_Os11g40410
OsAffx.31405.1.S1_at--274--911Chr11:23588273..23588297 (25 bp)
AGGCTGGTCCTGATTCTGGCATGTC
LOC_Os11g40410
OsAffx.31405.1.S1_at--169--3091Chr11:23588192..23588216 (25 bp)
AATAATGGGTGTGTTTCACGCCAAA
LOC_Os11g40410
Target Sequence 
AGAAAGCTCTTGTTCCAGACGCTCATGACATGAATCTGAGTGGAAACATATTGCAACAAGGTGCTATAATGGCCAATGCA
CTCATCGTCAACGAGGAGGATGAGGCATGTCGCTGGGAGATCCTAGCTGAGGTGTGGGCTCACTTGATTGTGCACATTGC
TCCCAGTTCCAGAATAGAAGCTCATGCCGAGAACCTCAAGTCTGGTAGCGAGTTCATAACCGTCATCTGGGCTTTGTTTT
CCCACTGTGGCATCGAGAAGAGCGAATTATGGCAGTAGCAGAAAAAGGGTGCAGAGTCTGGGAACAGCACTTTTCTGGAT
TGGCTAACCAGAGCAGTGATGTAGCAGATACCCATGTTCAGGAGGCTGGTCCTGATTCTGGCATGTCCTGAAACCTGAAT
TGCTGATGGCTGATGCTCTTCTCCCCTCGTGTTTTCAGTTTTCAATAATGGGTGTGTTTCACGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis