Browse Element(s) Details


OsAffx.31406.1.S1_at

Description tigr:9639.m03700
TID=OsAffx.31406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4043011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein
LOC_Os11g40430OsAffx.31406.1.S1_at11/1111+23600608..23604943Protein kinase domain containing protein, expressed
LOC_Os11g40439NANA11+23614246..23615924NA
LOC_Os11g40450OsAffx.20275.1.S1_at1/1111+23618819..23631316retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31406.1.S1_at--955--1091Chr11:23601178..23601202 (25 bp)
AGTGGCAACTAGCATCTGCACTGCT
LOC_Os11g40430
OsAffx.31406.1.S1_at--384--1691Chr11:23601131..23601155 (25 bp)
AGCCTAATCCAATTGCTCATGGTGA
LOC_Os11g40430
OsAffx.31406.1.S1_at--350--9831Chr11:23601103..23601127 (25 bp)
TAAACCAGGCAACATCCTCTTCGAT
LOC_Os11g40430
OsAffx.31406.1.S1_at--1016--3011Chr11:23601046..23601070 (25 bp)
AATCTCCCGTTTGTTACAGCAGACA
LOC_Os11g40430
OsAffx.31406.1.S1_at--828--8171Chr11:23601012..23601036 (25 bp)
GGAACGCCTAACCATATTACAGAAG
LOC_Os11g40430
OsAffx.31406.1.S1_at--1158--6951Chr11:23600978..23601002 (25 bp)
GTAGCGGTCCCTATATGGACCCTGA
LOC_Os11g40430
OsAffx.31406.1.S1_at--136--3811Chr11:23600930..23600954 (25 bp)
CTCCTCAGTCAGATGTATTCGCGTT
LOC_Os11g40430
OsAffx.31406.1.S1_at--240--6631Chr11:23600908..23600932 (25 bp)
GTTGGGTATCATTCTGCTGCAGCTA
LOC_Os11g40430
OsAffx.31406.1.S1_at--952--9112Chr11:23600894..23600918 (25 bp)
TGCTGCAGCTAGTCACAGGCCAAAG
LOC_Os11g40430
OsAffx.31406.1.S1_at--8--7991Chr11:23600746..23600770 (25 bp)
GGATGACACGTCTATACAGGATGCT
LOC_Os11g40430
OsAffx.31406.1.S1_at--485--2331Chr11:23600719..23600743 (25 bp)
AAAGATGGTTTCACTGGGCCTGAGA
LOC_Os11g40430
Target Sequence 
AGTGGCAACTAGCATCTGCACTGCTCTTGTATTTCTCCACAACGCCAAGCCTAATCCAATTGCTCATGGTGATCTTAAAC
CAGGCAACATCCTCTTCGATGATGAAAACATATGCAAGCTCAGTGACTTTGGAATCTCCCGTTTGTTACAGCAGACAAAC
GACACAGGAACGCCTAACCATATTACAGAAGTGCCAAAGGGTAGCGGTCCCTATATGGACCCTGAATTCAAGAATACAGG
CAAATTGACTCCTCAGTCAGATGTATTCGCGTTGGGTATCATTCTGCTGCAGCTAGTCACAGGCCAAAGTGCAACGGGCC
TAAGAAAGCACATCGTTGATAAATTGGAAGGTAAAAAATTGGAAAAAATGGACACACGCAAGCAAAAGATGATCTTGGAG
AAACTTCAAATCTTGGATGCTCAATTGAAGTTGGATGACACGTCTATACAGGATGCTGTAAAGATGGTTTCACTGGGCCT
GAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis