Browse Element(s) Details


OsAffx.31433.1.S1_at

Description tigr:9639.m03830
TID=OsAffx.31433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4164011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed
LOC_Os11g41620NANA11+24474794..24477526transposon protein, putative, Mutator sub-class
LOC_Os11g41630OsAffx.19312.1.S1_at11/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41630OsAffx.29766.1.S1_x_at2/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41640OsAffx.31433.1.S1_at11/1111+24481564..24482895Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g41650OsAffx.7376.1.S1_at11/1111+24487670..24491878Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os11g41659NANA11+24498220..24498413NA
LOC_Os11g41670Os.53307.1.S1_at11/1111+24503513..24507861expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31433.1.S1_at--370--5131Chr11:24481721..24481745 (25 bp)
GCACAATGCCTAGCAGCTTGTTTCT
LOC_Os11g41640
OsAffx.31433.1.S1_at--955--631Chr11:24481824..24481846 (23 bp)
ATGCATCAGGTCATCACTGGGAACA
LOC_Os11g41640
OsAffx.31433.1.S1_at--989--6671Chr11:24481854..24481878 (25 bp)
GTTCCCCATGGATGAGCACTTTGAG
LOC_Os11g41640
OsAffx.31433.1.S1_at--233--5491Chr11:24481910..24482007 (25 bp)
GAACTTCTCGCTCGGTATCAAGTAG
LOC_Os11g41640
OsAffx.31433.1.S1_at--387--2511Chr11:24482040..24482064 (25 bp)
AACTTGTCAATCCTAGCTGTTCCTC
LOC_Os11g41640
OsAffx.31433.1.S1_at--214--5931Chr11:24482068..24482092 (25 bp)
GAGCAGCGTCGGAGAGGATTCAATT
LOC_Os11g41640
OsAffx.31433.1.S1_at--161--3171Chr11:24482089..24482113 (25 bp)
AATTGCTGCAACTGATGGATCTGTA
LOC_Os11g41640
OsAffx.31433.1.S1_at--53--3231Chr11:24482136..24482160 (25 bp)
CAAGAGGCCATAAGCAGTGCTCCAA
LOC_Os11g41640
OsAffx.31433.1.S1_at--909--5231Chr11:24482301..24482325 (25 bp)
GAATACTTCAGCAGCTTGTTCCCAA
LOC_Os11g41640
OsAffx.31433.1.S1_at--439--5911Chr11:24482805..24482829 (25 bp)
GAGCTCTGACGACACATGGATGTTT
LOC_Os11g41640
OsAffx.31433.1.S1_at--819--4551Chr11:24482830..24482854 (25 bp)
GCGCCCCTAGCCTATAATGGCATGA
LOC_Os11g41640
Target Sequence 
GCACAATGCCTAGCAGCTTGTTTCTTCCTCTGATGGATGATGAGGGATTTGGCACAGTGCAATTGATGCATCAGGTCATC
ACTGGGAACAAGAGGATGTTCCCCATGGATGAGCACTTTGAGCAGCAGCAGAAGAAGCCGAAGAAGAAAACCCGAACTTC
TCGCTCGGTATCAAGTAGTTCAACCATTACTGACTATGAGACTAGCTCTGAACTTGTCAATCCTAGCTGTTCCTCCGGGA
GCAGCGTCGGAGAGGATTCAATTGCTGCAACTGATGGATCTGTAGTGCTGAAACAAAGTGACAATTCAAGAGGCCATAAG
CAGTGCTCCAAGGATACACAAAGCCTCTATGCTAAGAGGAGAAGGGAAAGGATTAATGAGAGACTGAGAATACTTCAGCA
GCTTGTTCCCAATGGCACTAAAGTTGACATCAGCACAATGCTGGAGGAAGCAGTTCAGTATGTCAAGTTTTTGCAGTTGC
AAATAAAGCTATTGAGCTCTGACGACACATGGATGTTTGCGCCCCTAGCCTATAATGGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis