Browse Element(s) Details


OsAffx.31441.1.S1_x_at

Description tigr:9639.m03915
TID=OsAffx.31441.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4248011/11Transferase family protein, expressed
LOC_Os07g141203/11agmatine coumaroyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42459NANA11+25066871..25067641NA
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31441.1.S1_x_at--1086--8591Chr11:25083063..25083087 (25 bp)
TGGTCCCGGCGATGCACAGCTTCTT
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--873--1551Chr11:25083046..25083070 (25 bp)
AGCTTCTTCGGCAACATGACGGCGT
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--263--2111Chr11:25083033..25083057 (25 bp)
ACATGACGGCGTACGCCCTCGGCGA
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--121--891Chr11:25082949..25082973 (25 bp)
AGGCCATCGCGTCGATCGCCTACGA
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--214--9951Chr11:25082929..25082953 (25 bp)
TACGACGCGTACGTGCAGGAGCTCG
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--868--9332Chr07:8058401..8058439 (25 bp)
TCGCCGACGGTGAACCAGACGGTGT
LOC_Os07g14120
OsAffx.31441.1.S1_x_at--262--5412Chr07:8058426..8058450 (25 bp)
GAACCAGACGGTGTTCGCGTCGTTC
LOC_Os07g14120
OsAffx.31441.1.S1_x_at--818--4112Chr07:8058457..8058476 (20 bp)
CGCTGGACACCGACTTCGGGTTCGG
LOC_Os07g14120
OsAffx.31441.1.S1_x_at--957--7191Chr11:25082693..25082717 (25 bp)
GTCGTGGCTGGTGAGCGCCTACATA
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--103--1671Chr11:25082680..25082704 (25 bp)
AGCGCCTACATATGGCCGCGGCTGG
LOC_Os11g42480
OsAffx.31441.1.S1_x_at--776--8531Chr11:25082646..25082670 (25 bp)
TGGAGTCCGACGACCACCGCATCTT
LOC_Os11g42480
Target Sequence 
TGGTCCCGGCGATGCACAGCTTCTTCGGCAACATGACGGCGTACGCCCTCGGCGAGGCGGCCGTGGAGGAGATCCTGGAG
AGGCCGCTGGCGGAGGTGGCGGCCATGGCGCGGGAGGCCATCGCGTCGATCGCCTACGACGCGTACGTGCAGGAGCTCGT
GGACTGGGTGGAGGAGCACAAGGCGGAGAAGATGATGGAGGTGAGCGCGCTCGGGCTGGGCTCGCCGACGGTGAACCAGA
CGGTGTTCGCGTCGTTCCCGCTGGACACCGACTTCGGGTTCGGCGAGGCGACGCTGGCCATGCCCGTGTGGGAGAACGGG
AGGGTGAGCTCCGGGACGCTGGCCGTCGGAGCGCGGCCGGGAGGCGACGGGTCGTGGCTGGTGAGCGCCTACATATGGCC
GCGGCTGGCGGCGGCGCTGGAGTCCGACGACCACCGCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31441.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis