Browse Element(s) Details


Os.27592.1.A1_at

Description gb:CB621140
DB_XREF= gi:29616128
DB_XREF=OSIIEa06N03.r
CLONE=OSIIEa06N03
TID=Os.27592.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27592 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177036.1 (A.thaliana) protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4249010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42459NANA11+25066871..25067641NA
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27592.1.A1_at--38--3551Chr11:25089794..25089818 (25 bp)
CATCCGCTGCAACGATCTCACTGAT
LOC_Os11g42490
Os.27592.1.A1_at--828--5211Chr11:25089845..25089869 (25 bp)
GAATTCAGTCATGAGAGCTCTGAGC
LOC_Os11g42490
Os.27592.1.A1_at--430--5911Chr11:25089859..25089883 (25 bp)
GAGCTCTGAGCAACGAGAAATCCGA
LOC_Os11g42490
Os.27592.1.A1_at--929--5971Chr11:25089873..25089897 (25 bp)
GAGAAATCCGAATCCACCAAGCTGA
LOC_Os11g42490
Os.27592.1.A1_at--257--5911Chr11:25089912..25089936 (25 bp)
GAGCTCGAGAGCTATGTCAGCAACA
LOC_Os11g42490
Os.27592.1.A1_at--400--8531Chr11:25090068..25090092 (25 bp)
TGGACATGGATGTGTCATCCAGCTA
LOC_Os11g42490
Os.27592.1.A1_at--114--6951Chr11:25090135..25090159 (25 bp)
GTAGACGGTGAACAGTTTGCTCTGA
LOC_Os11g42490
Os.27592.1.A1_at--1--7371Chr11:25090142..25090166 (25 bp)
GTGAACAGTTTGCTCTGATACTGGG
LOC_Os11g42490
Os.27592.1.A1_at--479--10231Chr11:25090260..25090284 (25 bp)
TTTGGTGCTATGACATGAAACTGAA
LOC_Os11g42490
Os.27592.1.A1_at--598--3851Chr11:25090280..25090304 (25 bp)
CTGAATTTCTACAGTGCTTATTTGA
LOC_Os11g42490
Os.27592.1.A1_at--92--5471NONE
GAACTGTATGTGGTACTTGAGATTG
NONE
Target Sequence 
CATCCGCTGCAACGATCTCACTGATCACTCCTCTCGCCTCCAAGCTGACAAGAATTCAGTCATGAGAGCTCTGAGCAACG
AGAAATCCGAATCCACCAAGCTGAGACTGAAACTNAGGGAGCTCGAGAGCTATGTCAGCAACAAGGACAATGAGATTGGG
GTTCTGAATTCTGAAGCTGAGGACAGAGAAGGGATGGTGGATGGCATGAGCAGGCAGTTTGAGCAGCTGCGGATCGCGNC
CGCCGNGGCGCATCGGAGGGGGAAGAACGGGGTTTGGACATGGATGTGTCATCCAGCTACCNCCNCNGTGCTCGCTGNTG
CTTCCGTCGTNTNCGCTGNTAGTAGACGGTGAACAGTTTGCTCTGATACTGGGGTTTTAATTACTTNTCTTGCTTCAGTA
TATNCAANNTTGAAATAATAACCAGAGGCTTNGNCCTTTTGTTACTTGTTACTATANGATTANCAGTTTGGTGCTATGAC
ATGAAACTGAATTTCTACAGTGCTTATTTGAACTGTATGTGGTACTTGAGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27592.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis