Browse Element(s) Details


OsAffx.31442.1.S1_at

Description tigr:9639.m03921
TID=OsAffx.31442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31442.1.S1_at--266--3991Chr11:25105030..25105054 (25 bp)
CGGGCGATGCGTGTGCGACGGAGGC
LOC_Os11g42520
OsAffx.31442.1.S1_at--331--8371Chr11:25105084..25105108 (25 bp)
GGCGTGGGCGGCTGGACCTGCGCGA
LOC_Os11g42520
OsAffx.31442.1.S1_at--609--8531Chr11:25105096..25105120 (25 bp)
TGGACCTGCGCGAGCGACGGTGCGA
LOC_Os11g42520
OsAffx.31442.1.S1_at--1040--6771Chr11:25107308..25107332 (25 bp)
GTTTAGCCGATGACGGTCCTGGGTA
LOC_Os11g42520
OsAffx.31442.1.S1_at--580--4011Chr11:25107315..25107339 (25 bp)
CGATGACGGTCCTGGGTACGAGTAT
LOC_Os11g42520
OsAffx.31442.1.S1_at--27--1931Chr11:25107320..25107344 (25 bp)
ACGGTCCTGGGTACGAGTATTGCTT
LOC_Os11g42520
OsAffx.31442.1.S1_at--489--9271Chr11:25107324..25107348 (25 bp)
TCCTGGGTACGAGTATTGCTTCCTA
LOC_Os11g42520
OsAffx.31442.1.S1_at--1162--6211Chr11:25107328..25107352 (25 bp)
GGGTACGAGTATTGCTTCCTAAAGT
LOC_Os11g42520
OsAffx.31442.1.S1_at--4--6091Chr11:25107334..25107358 (25 bp)
GAGTATTGCTTCCTAAAGTGCATCG
LOC_Os11g42520
OsAffx.31442.1.S1_at--543--9071Chr11:25107340..25107364 (25 bp)
TGCTTCCTAAAGTGCATCGACGAAT
LOC_Os11g42520
OsAffx.31442.1.S1_at--88--2331Chr11:25107348..25107372 (25 bp)
AAAGTGCATCGACGAATGCAACCAA
LOC_Os11g42520
Target Sequence 
CGGGCGATGCGTGTGCGACGGAGGCCGCGGCGGCGGCAGGCGGTGCACGGGAGGGGCGTGGGCGGCTGGACCTGCGCGAG
CGACGGTGCGACGCACGTGCGGCGGCCGCGGCAGCCTGTGGGCTGACCGCCGGCGGCGGGGGCGGGGGTTTAGCCGATGA
CGGTCCTGGGTACGAGTATTGCTTCCTAAAGTGCATCGACGAATGCAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis