Browse Element(s) Details


OsAffx.31443.1.S1_at

Description tigr:9639.m03927
TID=OsAffx.31443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4257011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42600OsAffx.135.1.S1_at2/1111+25138883..25142079transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31443.1.S1_at--272--2791Chr11:25119999..25120023 (25 bp)
AAGAGTTCCTGAAGCTCACCTTACT
LOC_Os11g42570
OsAffx.31443.1.S1_at--1116--7211Chr11:25120028..25120052 (25 bp)
GTCGACTGCCCTGCCATAAACAAAA
LOC_Os11g42570
OsAffx.31443.1.S1_at--961--2431Chr11:25120049..25120073 (25 bp)
AAAATCACCTTCACTGACGGAGCTG
LOC_Os11g42570
OsAffx.31443.1.S1_at--1034--3851Chr11:25120062..25120086 (25 bp)
CTGACGGAGCTGTGCCTAAGATGGA
LOC_Os11g42570
OsAffx.31443.1.S1_at--277--5851Chr11:25120099..25120123 (25 bp)
GACCTTGAGCAGGATAGAGTCTCTC
LOC_Os11g42570
OsAffx.31443.1.S1_at--1077--10031Chr11:25120113..25120137 (25 bp)
TAGAGTCTCTCTCCGGCATCAAAAA
LOC_Os11g42570
OsAffx.31443.1.S1_at--241--10091Chr11:25120153..25120177 (25 bp)
TAGGCTCCAGTTGTTTGGTGACCAT
LOC_Os11g42570
OsAffx.31443.1.S1_at--135--8931Chr11:25120171..25120195 (25 bp)
TGACCATGTCCCCTATCAGGTGAAA
LOC_Os11g42570
OsAffx.31443.1.S1_at--577--10471Chr11:25120203..25120227 (25 bp)
TTAAAGCACTTAGAATGCGCCTTGT
LOC_Os11g42570
OsAffx.31443.1.S1_at--776--9131Chr11:25120218..25120242 (25 bp)
TGCGCCTTGTTTATACACACGGGTT
LOC_Os11g42570
OsAffx.31443.1.S1_at--986--9771Chr11:25120305..25120329 (25 bp)
TAAGGTTTCAACTTTCTTGCTTCAC
LOC_Os11g42570
Target Sequence 
AAGAGTTCCTGAAGCTCACCTTACTTACTGTCGACTGCCCTGCCATAAACAAAATCACCTTCACTGACGGAGCTGTGCCT
AAGATGGAGAAGATAACCTGGACCTTGAGCAGGATAGAGTCTCTCTCCGGCATCAAAAACCTTCCAAAACTGAATAGGCT
CCAGTTGTTTGGTGACCATGTCCCCTATCAGGTGAAAGAAGACATTAAAGCACTTAGAATGCGCCTTGTTTATACACACG
GGTTCACGCAGGAGCAGCAGAAGCAAGCAAAAAGAGGAGCAGAAGAAGACCAGGAAAAAGATGATGTAAGGTTTCAACTT
TCTTGCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis