Browse Element(s) Details


Os.26771.1.A1_at

Description gb:CB664876
DB_XREF= gi:29668601
DB_XREF=OSJNEd10N19.r
CLONE=OSJNEd10N19
TID=Os.26771.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26771 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171937.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4254011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42600OsAffx.135.1.S1_at2/1111+25138883..25142079transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0004033molecular_functionaldo-keto reductase activity
GO:0005267molecular_functionpotassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26771.1.A1_at--192--10731Chr11:25115195..25115219 (25 bp)
TTGCTAGCTTACAGCCCAATGGCCA
LOC_Os11g42540
Os.26771.1.A1_at--316--871Chr11:25115213..25115237 (25 bp)
ATGGCCATGGGTATACTTTCAGGGA
LOC_Os11g42540
Os.26771.1.A1_at--190--9911Chr11:25115243..25115267 (25 bp)
TACTCATCGGATGATGGCGGCCCAC
LOC_Os11g42540
Os.26771.1.A1_at--469--8351Chr11:25115258..25115282 (25 bp)
GGCGGCCCACCAGATGCAAGAATGA
LOC_Os11g42540
Os.26771.1.A1_at--718--5431Chr11:25115418..25115442 (25 bp)
GAACCCCAAAATGAAAGCTGCTGTG
LOC_Os11g42540
Os.26771.1.A1_at--789--491Chr11:25115691..25115715 (25 bp)
ATCGGCTGTTTTCGGCGCGACAGAA
LOC_Os11g42540
Os.26771.1.A1_at--374--1731Chr11:25115746..25115770 (25 bp)
ACCAGGATCCATCTCTCTGAGGAGA
LOC_Os11g42540
Os.26771.1.A1_at--216--6751Chr11:25115791..25115815 (25 bp)
GTTCATGCAAGATATCCCAACCCTT
LOC_Os11g42540
Os.26771.1.A1_at--1151--4371Chr11:25115807..25115831 (25 bp)
CCAACCCTTGCCCATAAGAAGTTCA
LOC_Os11g42540
Os.26771.1.A1_at--242--5511Chr11:25115837..25115861 (25 bp)
GAACACAGTAGTCAGATCTTCTCTT
LOC_Os11g42540
Os.26771.1.A1_at--489--7051Chr11:25115916..25115940 (25 bp)
GTAACAGTTAGCAGTTTTGCCAAGG
LOC_Os11g42540
Target Sequence 
TTGCTAGCTTACAGCCCAATGGCCATGGGTATACTTTCAGGGAAGTATTACTCATCGGATGATGGCGGCCCACCAGATGC
AAGAATGAATCTTTTCAAAGGGAGATACTCTGAGGGTGAATCCAGATATAATCTTCAGAACCCCAAAATGAAAGCTGCTG
TGAAGGAATACGTAAAAATTTCTGCTAAGCANGGGATTTCGCCAGCGATTNTAGCAGTTGCGTTTGTTNTGAGGCACCCC
CTTGTGTCATCGGCTGTTTTCGGCGCGACAGAAATTTCGCAACTTACAGAAGTTNTTCAGGCCACCAGGATCCATCTCTC
TGAGGAGATTGTTGCAGAGATCNATGAAGTTCATGCAAGATATCCCAACCCTTGCCCATAAGAAGTTCAGNAACAGAACA
CAGTAGTCAGATCTTCTCTTTGNCTTTCTTGNTCTGNAGATTGCAAATTTGCAATGTCATATGATCATCAGTGAGTAACA
GTTAGCAGTTTTGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26771.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis