Browse Element(s) Details


OsAffx.31470.1.S1_at

Description tigr:9639.m04108
TID=OsAffx.31470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calmodulin-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44270OsAffx.31468.1.S1_at11/1111+26252601..26253000hypothetical protein
LOC_Os11g44280OsAffx.19365.1.S1_at11/1111+26255128..26255409hypothetical protein
LOC_Os11g44290NANA11+26260444..26260713expressed protein
LOC_Os11g44300OsAffx.7406.1.S1_at10/1111+26267439..26268268hypothetical protein
LOC_Os11g44310OsAffx.31470.1.S1_at11/1111+26272600..26277666expressed protein
LOC_Os11g44320NANA11+26277981..26278366hypothetical protein
LOC_Os11g44330Os.53792.1.S1_at11/1111+26283881..26286714expressed protein
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31470.1.S1_at--436--6991Chr11:26276216..26276240 (25 bp)
GTACTTCGAACCAGAGCGTGACTCC
LOC_Os11g44310
OsAffx.31470.1.S1_at--489--8951Chr11:26276234..26276348 (25 bp)
TGACTCCCCGTGAACTTGAGAGCTT
LOC_Os11g44310
OsAffx.31470.1.S1_at--268--6011Chr11:26276341..26276365 (25 bp)
GAGAGCTTCCAAGTTGCCAATGAGG
LOC_Os11g44310
OsAffx.31470.1.S1_at--553--5571Chr11:26276381..26276405 (25 bp)
GAAATGAGGCTTCGTCAGTTCCATC
LOC_Os11g44310
OsAffx.31470.1.S1_at--492--8031Chr11:26276425..26276449 (25 bp)
GGAGGGTCTAGCACACAGCAACAGT
LOC_Os11g44310
OsAffx.31470.1.S1_at--274--7611Chr11:26276585..26276609 (25 bp)
GGGAATTCATTCTTACCTGGTAATC
LOC_Os11g44310
OsAffx.31470.1.S1_at--984--5771Chr11:26276618..26276642 (25 bp)
GACGACGCCGTCAGAGATCATCTAG
LOC_Os11g44310
OsAffx.31470.1.S1_at--139--4931Chr11:26276702..26276726 (25 bp)
GCTTGGGCAAATCCCTACAGTGCAG
LOC_Os11g44310
OsAffx.31470.1.S1_at--834--10491Chr11:26276778..26276802 (25 bp)
TTAACCACGGTGGACTTTCAGCTGC
LOC_Os11g44310
OsAffx.31470.1.S1_at--514--3092Chr11:26370630..26370654 (25 bp)
AATACGTCAGTTGCAATCATCCATT
NONE
OsAffx.31470.1.S1_at--35--9251Chr11:26277598..26277622 (25 bp)
TCCATTGAATACACTCTGAGCCCTA
LOC_Os11g44310
Target Sequence 
GTACTTCGAACCAGAGCGTGACTCCCCGTGAACTTGAGAGCTTCCAAGTTGCCAATGAGGAAGTTTTGTCCATAAGAAAT
GAGGCTTCGTCAGTTCCATCCATGGATAATAATACCTTAGGAGGGTCTAGCACACAGCAACAGTGTTTTTTGGAACACAA
CACAACATCTGAATCTGATGGGAATTCATTCTTACCTGGTAATCCATCCACGGACGACGCCGTCAGAGATCATCTAGCAG
AGCTGGAAAAAGCTCTCCTTGAAGATGAGTCATGGGGTGACTTTGATTTCAATGAAGCTTGGGCAAATCCCTACAGTGCA
GTGGAGCATAGCACGGGGCTTTCTTCTGTCAATGGAGCACATAATAATAATATTAACCACGGTGGACTTTCAGCTGCCAG
TGAAGCAGGCAGTGTAAGCTATGGCGGACTTTCACCACCTGTCAGTGAAGTAGGGAGTAGAAGGTTTTTGAGAAACATTT
CCGGGAAAATACGTCAGTTGCAATCATCCATTGAATACACTCTGAGCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis