Browse Element(s) Details


OsAffx.31522.2.S1_at

Description tigr:9639.m04383
TID=OsAffx.31522.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4710010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47050Os.10827.1.S1_x_at3/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47050Os.46055.2.S1_x_at2/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47060OsAffx.7437.1.S1_at11/1111+27715235..27715606expressed protein
LOC_Os11g47070OsAffx.25936.2.S1_x_at5/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.7.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.1.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.5.S1_x_at2/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.17387.1.S1_s_at1/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47080Os.26886.3.S1_x_at2/1111+27728221..27731113transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47089NANA11+27732938..27733366NA
LOC_Os11g47100OsAffx.31522.2.S1_at10/1111+27734631..27736464hypothetical protein
LOC_Os11g47100Os.38403.1.S1_s_at1/1111+27734631..27736464hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31522.2.S1_at--1045--4171Chr11:27734789..27734812 (24 bp)
CCCAGACATCCAGTGGAATGCAGGA
LOC_Os11g47100
OsAffx.31522.2.S1_at--139--5671Chr11:27734793..27735198 (25 bp)
GACATCCAGTGGAATGCAGGATTAA
LOC_Os11g47100
OsAffx.31522.2.S1_at--302--4351NONE
CCAGTGGAATGCAGGATTAAACAAA
NONE
OsAffx.31522.2.S1_at--61--2231Chr11:27736088..27736332 (25 bp)
ACAATGGCGTGACACCGACCAAGGC
LOC_Os11g47100
OsAffx.31522.2.S1_at--711--2951Chr11:27736313..27736334 (22 bp)
AATGGCGTGACACCGACCAAGGCCT
LOC_Os11g47100
OsAffx.31522.2.S1_at--175--7371Chr11:27736316..27736340 (25 bp)
GTGACACCGACCAAGGCCTCCGGAG
LOC_Os11g47100
OsAffx.31522.2.S1_at--1124--4171Chr11:27736352..27736376 (25 bp)
CCCAGAGCTATCTAAGGGCTCCGAA
LOC_Os11g47100
OsAffx.31522.2.S1_at--179--1371Chr11:27736355..27736379 (25 bp)
AGAGCTATCTAAGGGCTCCGAAGAT
LOC_Os11g47100
OsAffx.31522.2.S1_at--1005--9911Chr11:27736360..27736384 (25 bp)
TATCTAAGGGCTCCGAAGATAACCT
LOC_Os11g47100
OsAffx.31522.2.S1_at--409--9771Chr11:27736364..27736388 (25 bp)
TAAGGGCTCCGAAGATAACCTGGAC
LOC_Os11g47100
OsAffx.31522.2.S1_at--241--2911Chr11:27736403..27736427 (25 bp)
CAAGGCCCCCGGAGCTATCCAAGGG
LOC_Os11g47100
Target Sequence 
CCCAGACATCCAGTGGAATGCAGGATTAAACAAATACGATACCCTTGGAATACTCTCGGGTGAAATGCTACAATGGCGTG
ACACCGACCAAGGCCTCCGGAGCCCTTCAAGCCCCCAGAGCTATCTAAGGGCTCCGAAGATAACCTGGACCTCAAGGAGC
CCTTCAAGGCCCCCGGAGCTATCCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31522.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis