Browse Element(s) Details


Os.38403.1.S1_s_at

Description gb:BP184903
DB_XREF= gi:32948331
DB_XREF=BP184903
TID=Os.38403.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38403 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4625011/11expressed protein
LOC_Os11g471001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein
LOC_Os11g46260Os.14919.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46260Os.56216.1.S1_at1/1111+27509843..27512311hypothetical protein
LOC_Os11g46270NANA11+27512604..27514961retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46280OsAffx.31083.5.S1_s_at11/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.4.S1_x_at5/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.4.S1_at3/1111+27515520..27516583hypothetical protein
LOC_Os11g46280OsAffx.31083.1.S1_x_at1/1111+27515520..27516583hypothetical protein
LOC_Os11g46290OsAffx.29313.1.S1_at1/1111+27519490..27522219transposon protein, putative, Mutator sub-class
LOC_Os11g46300Os.27530.1.S1_at11/1111+27524262..27526145expressed protein
LOC_Os11g46806Os.46012.2.S1_x_at9/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.46012.3.S1_x_at8/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.27088.1.A1_x_at5/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46806Os.54691.1.S1_x_at1/1111+27529347..27530366retrotransposon protein, putative, unclassified
LOC_Os11g46810OsAffx.22442.1.S1_x_at1/1111+27531745..27533826Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38403.1.S1_s_at--250--10832Chr11:27734593..27734617 (25 bp)
TTGGGAATACCAACCGCTCAATCCG
NONE
Os.38403.1.S1_s_at--1009--4171Chr11:27504960..27504984 (25 bp)
CCCAGATATCCAGCGGAATGCAGGT
LOC_Os11g46250
Os.38403.1.S1_s_at--1087--691Chr11:27504989..27505013 (25 bp)
ATGATCAGAGCAGGCGGCATCCAGC
LOC_Os11g46250
Os.38403.1.S1_s_at--533--9211Chr11:27505008..27505032 (25 bp)
TCCAGCTTCAGGAGCAGCGTACAGG
LOC_Os11g46250
Os.38403.1.S1_s_at--593--2131Chr11:27505028..27505052 (25 bp)
ACAGGGAGCGCAGGTACTACATTTG
LOC_Os11g46250
Os.38403.1.S1_s_at--162--8031Chr11:27505085..27505109 (25 bp)
GGAGGTGTAATCATGGAACCATCAT
LOC_Os11g46250
Os.38403.1.S1_s_at--490--9652Chr11:27734942..27734966 (25 bp)
TCAGCCCTGTAATCATAATTTGGAC
LOC_Os11g47100
Os.38403.1.S1_s_at--228--10451Chr11:27505183..27505207 (25 bp)
TTAGACACTGTTTTGCTGGGTGCAT
LOC_Os11g46250
Os.38403.1.S1_s_at--1116--8611Chr11:27505199..27505223 (25 bp)
TGGGTGCATGCTATCTGTCGCTCTC
LOC_Os11g46250
Os.38403.1.S1_s_at--316--1991Chr11:27505230..27505254 (25 bp)
ACTGCCCGGCGGAAATCTTTTGTGG
LOC_Os11g46250
Os.38403.1.S1_s_at--433--3731Chr11:27505273..27505297 (25 bp)
CTAAGGAGGCTATCATGAGACTATC
LOC_Os11g46250
Target Sequence 
TTGGGAATACCAACCGCTCAATCCGGCACCACATCACCATGACCAACACAGTGGGAGATATCACAGAGGCGGTGACACGT
ACTCGGAATGGGGTTATGATGCTGGGGAGCCAACTTATGGCGCGAACGAAGGGAGACGAAAGGGTGGCATACATTCAGAG
TACCAGTCGAAGCCAGTAGGATCGTCTGATGTTGCCCCAGATATCCAGCGGAATGCAGGTGCTGATGATCAGAGCAGGCG
GCATCCAGCTTCAGGAGCAGCGTACAGGGAGCGCAGGTACTACATTTGATGTTGCTGTTAGGAAGCTGTATGTGTTACAT
GGAGGTGTAATCATGGAACCATCATCATTCAGCCCTGTAATCATAATTTGGACGAGTTTAGTTGATGAGGTTTTGTAGGA
ATAACACTTAGTATCACATTAGACACTGTTTTGCTGGGTGCATGCTATCTGTCGCTCTCGCTCCTACTGCCCGGCGGAAA
TCTTTTGTGGGGGACATTTTTATGGTATCTAAGGAGGCTATCATGAGACTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis