Browse Element(s) Details


OsAffx.31507.1.S1_at

Description tigr:9639.m04309
TID=OsAffx.31507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4620011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46160Os.14491.2.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46160Os.47463.1.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46170NANA11+27457406..27458972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31507.1.S1_at--435--6171Chr11:27472129..27472153 (25 bp)
GAGGATGACCATGAGTTTCTAGCCA
LOC_Os11g46200
OsAffx.31507.1.S1_at--170--10151Chr11:27472100..27472124 (25 bp)
TATGCCTAACCTCCAGATGCTTGTA
LOC_Os11g46200
OsAffx.31507.1.S1_at--710--8751Chr11:27472079..27472103 (25 bp)
TGTACTGAGGTTCGAGGCCCCACAA
LOC_Os11g46200
OsAffx.31507.1.S1_at--1139--7271Chr11:27471988..27472012 (25 bp)
GTGCCACGGATAACCTTCCAGGAAG
LOC_Os11g46200
OsAffx.31507.1.S1_at--1070--9311Chr11:27471939..27471963 (25 bp)
TCGAGTTTAAGTTCTACGCTGGCCC
LOC_Os11g46200
OsAffx.31507.1.S1_at--1002--2431Chr11:27471870..27471894 (25 bp)
AAAAGGTGGTCTTTCGCTGCTCCAA
LOC_Os11g46200
OsAffx.31507.1.S1_at--362--1691Chr11:27471760..27471784 (25 bp)
AGCCTTCTCATCACTGAGGGCGATA
LOC_Os11g46200
OsAffx.31507.1.S1_at--532--5531Chr11:27471700..27471724 (25 bp)
GAAAACATTGTCGTTGTCCACGCTG
LOC_Os11g46200
OsAffx.31507.1.S1_at--831--391Chr11:27471661..27471685 (25 bp)
ATCAGTTGCTCTAGCTGCGGCCGAA
LOC_Os11g46200
OsAffx.31507.1.S1_at--622--8392Chr06:22492451..22492470 (20 bp)
GGCCGAACCAGCACTAGTATCCAAG
NONE
OsAffx.31507.1.S1_at--131--4871Chr11:27471592..27471616 (25 bp)
GCTATGGATTTGTTCTGGCCGGAGT
LOC_Os11g46200
Target Sequence 
GAGGATGACCATGAGTTTCTAGCCAACAATATGCCTAACCTCCAGATGCTTGTACTGAGGTTCGAGGCCCCACAAAGAGA
GCCCATCATCATTAACCGCACAGGCTTCCAGATGCTGGAGAGATTCCTTGTGGAGAGCCGGGTGCCACGGATAACCTTCC
AGGAAGGAGCCATGCCCAAGCTCAAGCATCTCGAGTTTAAGTTCTACGCTGGCCCACCAAGCAAAGATCCCATAGGAATC
ACCCACCTCAAGAGCCTCCAAAAGGTGGTCTTTCGCTGCTCCAAATGGTACAAGAGCGACAACCCTGGCATCAAGGCTGC
CATTGACGTCGTGAAGAAAGAAGCAAGGCAGCATCCCAACCGGCCGATCAGCCTTCTCATCACTGAGGGCGATAAGGAGG
TACCGAATATTGAGGCACACGGGAGCAGTGAAAACATTGTCGTTGTCCACGCTGCTCCTGACGACGCCATCAGTTGCTCT
AGCTGCGGCCGAACCAGCACTAGTATCCAAGAGGGAACAGTCCGAGATCGAATACCAGCTATGGATTTGTTCTGGCCGGA
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis