Browse Element(s) Details


Os.53653.1.S1_at

Description gb:AK108692.1
DB_XREF= gi:32993901
TID=Os.53653.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D06, full insert sequence.
FL= gb:AK108692.1 gb:AK073759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4621011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46160Os.14491.2.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46160Os.47463.1.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46170NANA11+27457406..27458972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53653.1.S1_at--141--931Chr11:27480586..27480610 (25 bp)
AGGCATACTTTAATCAGCTCGCAAG
LOC_Os11g46210
Os.53653.1.S1_at--875--2031Chr11:27480616..27480640 (25 bp)
ACTTAATACGCCCTGTGGAGCATGG
LOC_Os11g46210
Os.53653.1.S1_at--207--8151Chr11:27480738..27480762 (25 bp)
GGACACTGGCAGATGACTGCGCCAA
LOC_Os11g46210
Os.53653.1.S1_at--123--2851Chr11:27480769..27480793 (25 bp)
AAGTCCGTCGACTATCGTTGCAAAG
LOC_Os11g46210
Os.53653.1.S1_at--663--2431Chr11:27480821..27480845 (25 bp)
AAAAGGCCTGAACTTGGCTCAAGTG
LOC_Os11g46210
Os.53653.1.S1_at--856--4831Chr11:27480837..27480861 (25 bp)
GCTCAAGTGCGATCACTGACGGTGT
LOC_Os11g46210
Os.53653.1.S1_at--739--5751Chr11:27480854..27480878 (25 bp)
GACGGTGTTTGGGAACCTGAACCAT
LOC_Os11g46210
Os.53653.1.S1_at--689--1731Chr11:27480874..27480898 (25 bp)
ACCATGTTCCATTCCATTCATTCAA
LOC_Os11g46210
Os.53653.1.S1_at--746--331Chr11:27480909..27480933 (25 bp)
ATACAGGTGCTGGATCTTGAGGGTT
LOC_Os11g46210
Os.53653.1.S1_at--702--2831Chr11:27480987..27481011 (25 bp)
AAGTATTTGAGCATCCGGCGGACAG
LOC_Os11g46210
Os.53653.1.S1_at--1153--5971Chr11:27481074..27481098 (25 bp)
GAGACATATGTCGAGGAGCTGCCTA
LOC_Os11g46210
Target Sequence 
AGGCATACTTTAATCAGCTCGCAAGAAGGAACTTAATACGCCCTGTGGAGCATGGCAGCAATGGGAAGGTAAAAGCCTTT
CAAGTTCATGACATGGTTCTTGAATACATCATGTCGAAGTCAATCGAAGAGAATTTTATTACTGTGGTTGGTGGACACTG
GCAGATGACTGCGCCAAGCAATAAAGTCCGTCGACTATCGTTGCAAAGCAGTGGATCCAAGCATGGAAATTCTACAAAAG
GCCTGAACTTGGCTCAAGTGCGATCACTGACGGTGTTTGGGAACCTGAACCATGTTCCATTCCATTCATTCAACTATGGG
ATAATACAGGTGCTGGATCTTGAGGGTTGGAAGGGTTTGAAAGAGAGACATGTGACGGAGATATGTCAAATGCTTGTACT
CAAGTATTTGAGCATCCGGCGGACAGAAATTGCCAAAATTCCCTCAAAGATTGAGAAACTTGAGTATTTGGAAACTCTTG
ACATAAGGGAGACATATGTCGAGGAGCTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis