Browse Element(s) Details


OsAffx.19403.1.S1_s_at

Description tigr:9639.m04311
TID=OsAffx.19403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4622011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46170NANA11+27457406..27458972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19403.1.S1_s_at--1130--1591Chr11:27484355..27484379 (25 bp)
AGCTGCCAACGCAACGCCGACGAGA
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--60--3831Chr11:27484353..27484377 (25 bp)
CTGCCAACGCAACGCCGACGAGAAA
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--990--2151Chr11:27484348..27484372 (25 bp)
AACGCAACGCCGACGAGAAATCCGG
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--246--4471Chr11:27484295..27484319 (25 bp)
GCCTCCGCCGGAAACTCGAGCGCCG
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--873--7891Chr11:27483754..27483778 (25 bp)
GGTTCCTGTGCTTGAAGCCAAGTGC
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--120--10671Chr11:27483752..27483776 (25 bp)
TTCCTGTGCTTGAAGCCAAGTGCTG
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--534--4271Chr11:27483750..27483774 (25 bp)
CCTGTGCTTGAAGCCAAGTGCTGGT
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--638--7311Chr11:27483747..27483771 (25 bp)
GTGCTTGAAGCCAAGTGCTGGTTCT
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--148--4931Chr11:27483745..27483769 (25 bp)
GCTTGAAGCCAAGTGCTGGTTCTTC
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--357--5431Chr11:27483741..27483765 (25 bp)
GAAGCCAAGTGCTGGTTCTTCATTG
LOC_Os11g46220
OsAffx.19403.1.S1_s_at--546--4391Chr11:27483738..27483762 (25 bp)
GCCAAGTGCTGGTTCTTCATTGGCA
LOC_Os11g46220
Target Sequence 
AGCTGCCAACGCAACGCCGACGAGAAATCCGGCGAACCCCACCACGGCCATGGATTCGCCGCCTCCGCCGGAAACTCGAG
CGCCGCGGCGGCGGCGGCGGCGGCGGGCGGGTTCCTGTGCTTGAAGCCAAGTGCTGGTTCTTCATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis