Browse Element(s) Details


OsAffx.3155.1.S1_x_at

Description gb:NM_187749.1
DB_XREF= gi:34902583
TID=OsAffx.3155.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1123F12.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3155.1.S1_x_at--970--9111Chr03:3437997..3438021 (25 bp)
TGCTGCAGTGCTGCGGCGTGCTCCT
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--1153--8371Chr03:3437969..3437993 (25 bp)
GGCGAGGCCGTTGAAGGGCGACGTC
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--195--4711Chr03:3437913..3437937 (25 bp)
GCGGCGAGATGTTCGTCATGCAGAT
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--750--4591Chr03:3437910..3437934 (25 bp)
GCGAGATGTTCGTCATGCAGATACT
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--583--6711Chr03:3437903..3437927 (25 bp)
GTTCGTCATGCAGATACTGAAGACC
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--367--651Chr03:3437896..3437920 (25 bp)
ATGCAGATACTGAAGACCAGCACCC
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--240--1271Chr03:3437892..3437916 (25 bp)
AGATACTGAAGACCAGCACCCCAAC
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--1137--4351Chr03:3437872..3437896 (25 bp)
CCAACCACGCCGGTAGGCAATGGGT
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--743--1711Chr03:3437869..3437893 (25 bp)
ACCACGCCGGTAGGCAATGGGTGCA
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--926--4471Chr03:3437864..3437888 (25 bp)
GCCGGTAGGCAATGGGTGCAAACAA
LOC_Os03g06820
OsAffx.3155.1.S1_x_at--1002--3191Chr03:3437855..3437879 (25 bp)
CAATGGGTGCAAACAAGGCGAGACC
LOC_Os03g06820
Target Sequence 
TGCTGCAGTGCTGCGGCGTGCTCCTCGCGGCGAGGCCGTTGAAGGGCGACGTCGTCGCCGCCGCCGGCGGTGGCGGAGGC
GGTGGCGGCGAGATGTTCGTCATGCAGATACTGAAGACCAGCACCCCAACCACGCCGGTAGGCAATGGGTGCAAACAAGG
CGAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis