Browse Element(s) Details


OsAffx.31587.1.S1_at

Description tigr:9640.m00423
TID=OsAffx.31587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0502010/11Protein GOS9, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04980Os.13051.1.S1_at11/1112+2152131..2157087Meiotic recombination protein DMC1 homolog, putative, expressed
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed
LOC_Os12g05000OsAffx.31586.1.S1_s_at11/1112+2170700..2173955expressed protein
LOC_Os12g05010OsAffx.16205.1.S1_at2/1112+2175946..2177904hypothetical protein
LOC_Os12g05020OsAffx.31587.1.S1_at10/1112+2178172..2179893Protein GOS9, putative
LOC_Os12g05030OsAffx.31588.1.S1_at11/1112+2182964..2183687hypothetical protein
LOC_Os12g05040Os.7649.1.S1_at7/1112+2192737..2197849heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31587.1.S1_at--1107--3251Chr12:2178205..2178229 (25 bp)
CAACGGAGAAACGATGGCAACATCA
LOC_Os12g05020
OsAffx.31587.1.S1_at--545--6232Chr12:2178217..2178241 (25 bp)
GATGGCAACATCATAGAGATTACAA
LOC_Os12g05020
OsAffx.31587.1.S1_at--842--3031Chr12:2178240..2178264 (25 bp)
AATCCATGGATTCTGCCCTGTGCCT
LOC_Os12g05020
OsAffx.31587.1.S1_at--464--111Chr12:2178249..2178273 (25 bp)
ATTCTGCCCTGTGCCTAGAGGCTCT
LOC_Os12g05020
OsAffx.31587.1.S1_at--523--911Chr12:2178267..2178291 (25 bp)
AGGCTCTCAGACTCTGCCAATGGGA
LOC_Os12g05020
OsAffx.31587.1.S1_at--384--611NONE
ATGCCCACGTACAATATCCAGCTGG
NONE
OsAffx.31587.1.S1_at--1008--10131Chr12:2179685..2179709 (25 bp)
TATCGGAGTACGTGATGGAAGTGTC
LOC_Os12g05020
OsAffx.31587.1.S1_at--348--8691Chr12:2179706..2179730 (25 bp)
TGTCCGGGACGTACGGCGCGTACAA
LOC_Os12g05020
OsAffx.31587.1.S1_at--384--1951Chr12:2179718..2179742 (25 bp)
ACGGCGCGTACAACAGCAACGTGGT
LOC_Os12g05020
OsAffx.31587.1.S1_at--53--8871Chr12:2179745..2179769 (25 bp)
TGATGTCGCTGAGGGTGGCCACCAA
LOC_Os12g05020
OsAffx.31587.1.S1_at--606--3651Chr12:2179839..2179863 (25 bp)
CTTCTTCGGCCGCTCTGGAGAATTG
LOC_Os12g05020
Target Sequence 
CAACGGAGAAACGATGGCAACATCATAGAGATTACAATCCATGGATTCTGCCCTGTGCCTAGAGGCTCTCAGACTCTGCC
AATGGGACCATCCCAGCAGTACCCCATGCCCACGTACAATATCCAGCTGGGGCTATCGGAGTACGTGATGGAAGTGTCCG
GGACGTACGGCGCGTACAACAGCAACGTGGTGGTGATGTCGCTGAGGGTGGCCACCAACCTGAGGGCGTACGGCCCGTTC
GGCCGCGCGGAGGGCACGTCGTTCACCGCCAGCGGCCGCGTCGTCGGCTTCTTCGGCCGCTCTGGAGAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis