Browse Element(s) Details


OsAffx.31588.1.S1_at

Description tigr:9640.m00424
TID=OsAffx.31588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0503011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed
LOC_Os12g05000OsAffx.31586.1.S1_s_at11/1112+2170700..2173955expressed protein
LOC_Os12g05010OsAffx.16205.1.S1_at2/1112+2175946..2177904hypothetical protein
LOC_Os12g05020OsAffx.31587.1.S1_at10/1112+2178172..2179893Protein GOS9, putative
LOC_Os12g05030OsAffx.31588.1.S1_at11/1112+2182964..2183687hypothetical protein
LOC_Os12g05040Os.7649.1.S1_at7/1112+2192737..2197849heavy metal-associated domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31588.1.S1_at--1088--591Chr12:2183093..2183117 (25 bp)
ATGCCGCCTCGCAGCTGCAGTGGCT
LOC_Os12g05030
OsAffx.31588.1.S1_at--666--4571Chr12:2183220..2183370 (25 bp)
GCGCGGAGGAGTTCAGATTGTTTCT
LOC_Os12g05030
OsAffx.31588.1.S1_at--1084--971Chr12:2183355..2183376 (22 bp)
AGGAGTTCAGATTGTTTCTCGGAGA
LOC_Os12g05030
OsAffx.31588.1.S1_at--131--5591Chr12:2183381..2183478 (25 bp)
GAAATTTCTCGTCTTGTTGTGGCCA
LOC_Os12g05030
OsAffx.31588.1.S1_at--616--10311Chr12:2183385..2183482 (25 bp)
TTTCTCGTCTTGTTGTGGCCAATGA
LOC_Os12g05030
OsAffx.31588.1.S1_at--605--9391Chr12:2183389..2183486 (25 bp)
TCGTCTTGTTGTGGCCAATGACGAC
LOC_Os12g05030
OsAffx.31588.1.S1_at--1099--2571Chr12:2183511..2183535 (25 bp)
AACGTCGGCGCAGACTGGATTTTTG
LOC_Os12g05030
OsAffx.31588.1.S1_at--765--9131Chr12:2183566..2183590 (25 bp)
TGCGGCGCAAGGACACGCTGCGTCA
LOC_Os12g05030
OsAffx.31588.1.S1_at--1004--8131Chr12:2183576..2183600 (25 bp)
GGACACGCTGCGTCAAAGAACGGAC
LOC_Os12g05030
OsAffx.31588.1.S1_at--248--9711Chr12:2183588..2183612 (25 bp)
TCAAAGAACGGACGCGCGTGGACTC
LOC_Os12g05030
OsAffx.31588.1.S1_at--684--2571Chr12:2183594..2183618 (25 bp)
AACGGACGCGCGTGGACTCGTCAAA
LOC_Os12g05030
Target Sequence 
ATGCCGCCTCGCAGCTGCAGTGGCTCGGCGTCGGCGGAGCCGCCGGCGCCCACAGAGGAGCCGCGCAGGCGCAGCACCAG
CCACCGCCGCCAGGAGAAGGAGCGGGTGGGCCGGGCCAGCGGCGGTGGCGCGGAGGAGTTCAGATTGTTTCTCGGAGAAG
GAGAAATTTCTCGTCTTGTTGTGGCCAATGACGACGACGACGCCGTCGGCAGCAGCAAGAACGTCGGCGCAGACTGGATT
TTTGGAGGGCGAATTTGGGATTTCTCCGAGCGGCTGCGGCGCAAGGACACGCTGCGTCAAAGAACGGACGCGCGTGGACT
CGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis