Browse Element(s) Details


OsAffx.31600.1.S1_at

Description tigr:9640.m00479
TID=OsAffx.31600.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0560911/11F-box domain containing protein
LOC_Os12g0570911/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31600.1.S1_at--491--5352Chr12:2635332..2635356 (25 bp)
GAAGATTGCATCTACCACGACGGCG
LOC_Os12g05709
OsAffx.31600.1.S1_at--848--572Chr12:2635386..2635410 (25 bp)
ATCCACGCCATTGATGTCGTCAGTG
LOC_Os12g05709
OsAffx.31600.1.S1_at--607--292Chr12:2635429..2635453 (25 bp)
ATAGACTGATTCTCAAGCCGACCAT
LOC_Os12g05709
OsAffx.31600.1.S1_at--466--10832Chr12:2635461..2635485 (25 bp)
TTGGGCACCCTCTACATTGTACGTA
LOC_Os12g05709
OsAffx.31600.1.S1_at--636--5312Chr12:2635491..2635515 (25 bp)
GAAGGTGACATCCTGCAGGTCTTGC
LOC_Os12g05709
OsAffx.31600.1.S1_at--636--2032Chr12:2635650..2635674 (25 bp)
ACTAGTTACTCGATGTGCTTGCCAG
LOC_Os12g05709
OsAffx.31600.1.S1_at--599--5312Chr12:2635676..2635700 (25 bp)
GAAGGATTATCCACACTTGATGCCA
LOC_Os12g05709
OsAffx.31600.1.S1_at--593--6312Chr12:2635719..2635743 (25 bp)
GATGACTACGGGTACTTGGTTCACC
LOC_Os12g05709
OsAffx.31600.1.S1_at--849--3872Chr12:2635743..2635767 (25 bp)
CGTAAACATCTTCGTCGGGACGTTG
LOC_Os12g05709
OsAffx.31600.1.S1_at--272--8672Chr12:2635802..2635826 (25 bp)
TGTGGAGTATCCTCAGCCGTGGCTG
LOC_Os12g05709
OsAffx.31600.1.S1_at--436--3172Chr12:2635827..2635851 (25 bp)
AATTGGCCACTAGCTCCAGTTTGGA
LOC_Os12g05709
Target Sequence 
GAAGATTGCATCTACCACGACGGCGTGTTCTACGCCCAGACCGTTCACGGCGCCATCCACGCCATTGATGTCGTCAGTGC
TTCTTCCTCCTTCACCCATAGACTGATTCTCAAGCCGACCATGGGTGAATTGGGCACCCTCTACATTGTACGTACCACGG
AAGGTGACATCCTGCAGGTCTTGCGAGTCACGGAAGAAGATGAAGGTAGCGAGCATAAGGACGTACGAACAACTGAAATC
GGGGTGTACAAGGTTGACTACAAGAAGCAAGATCTTGATGACGTCGATGACATAGGTAACAATGCATTGTTTATTGGCAC
TAGTTACTCGATGTGCTTGCCAGTGAAGGATTATCCACACTTGATGCCAAATCACATATATTTCGACGATGACTACGGGT
ACTTGGTTCACCGTAAACATCTTCGTCGGGACGTTGGAGTTTATGATTATACGAATGACACTGCGATCGATGTGGAGTAT
CCTCAGCCGTGGCTGAATTGGCCACTAGCTCCAGTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis