Browse Element(s) Details


OsAffx.31610.1.S1_x_at

Description tigr:9637.m02027
TID=OsAffx.31610.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ST13-like tumor suppressor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2365011/11Hsc70-interacting protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23610OsAffx.29992.1.S1_at11/119+14024469..14025794hypothetical protein
LOC_Os09g23620Os.3391.1.S1_at11/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23620Os.57514.1.S1_x_at1/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23660Os.50959.1.S1_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23660Os.14666.2.S1_x_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31610.1.S1_x_at--1020--8611Chr09:14050464..14050487 (24 bp)
TGGTGATGTGATCGCTATCCACTCA
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--246--8711Chr09:14050399..14050423 (25 bp)
TGTCTAGGCTTGTGGTTCTCTATTT
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--205--6731Chr09:14050385..14050409 (25 bp)
GTTCTCTATTTCACTGCAGCATGGT
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--613--8431Chr09:14050357..14050381 (25 bp)
GGCCATGTCGTTTTATTGGACCTGT
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--983--8071Chr09:14050340..14050364 (25 bp)
GGACCTGTTTGCAAAAGCTTAGCTG
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--470--1111Chr09:14050265..14050289 (25 bp)
AGTGTCGCATATCGCTGGAACGTCT
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--516--1111Chr09:14050238..14050262 (25 bp)
AGTGTTCCATCATTCTTCTTTGTGA
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--922--1231Chr09:14050155..14050179 (25 bp)
AGTTGCTCAGCATGGATCATCCTAA
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--499--8911Chr09:14050126..14050150 (25 bp)
TGAGCAGTCCTGTTACTTGTCTTAC
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--1043--10451Chr09:14050029..14050053 (25 bp)
TTAGCTGTTCTGTGTACTTTCTGTG
LOC_Os09g23650
OsAffx.31610.1.S1_x_at--768--7011Chr09:14050016..14050040 (25 bp)
GTACTTTCTGTGTTGCTCTATGCCT
LOC_Os09g23650
Target Sequence 
TGGTGATGTGATCGCTATCCACTCATCCAGTGAGCTGGACACAAAGCTGAAGGCAGCCTCAAGCCTGTCTAGGCTTGTGG
TTCTCTATTTCACTGCAGCATGGTGTGGGCCATGTCGTTTTATTGGACCTGTTTGCAAAAGCTTAGCTGAAAAGCACCGG
AATGTTGTTTTCCTTAAGGTGGACATCGATGAACTAAACAGTGTCGCATATCGCTGGAACGTCTCCAGTGTTCCATCATT
CTTCTTTGTGAGGAATGGAAAGGAGATCGATAAAGTTGTTGGTGCTGACAAGAATGGCCTTGAGAGGAAAGTTGCTCAGC
ATGGATCATCCTAAACTGTGAGCAGTCCTGTTACTTGTCTTACTTCTATGCTGTATGTTTTATGACGTGGAATAAGTGCT
TATGGATAAAAGTTGACATACACATCGAGAACTTTTTAGCTGTTCTGTGTACTTTCTGTGTTGCTCTATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31610.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis