Browse Element(s) Details


OsAffx.31624.1.S1_at

Description tigr:9640.m00615
TID=OsAffx.31624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=21 kDa extracellular calmodulin-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0690011/11Citrate binding protein precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06900OsAffx.31624.1.S1_at11/1112+3356303..3357874Citrate binding protein precursor, putative
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31624.1.S1_at--560--7951Chr12:3356632..3356656 (25 bp)
GGATACGTGCCATCAGGAACATCAG
LOC_Os12g06900
OsAffx.31624.1.S1_at--326--7851Chr12:3356606..3356630 (25 bp)
GGTATCGGTGATGCAGATCCACAAT
LOC_Os12g06900
OsAffx.31624.1.S1_at--147--331Chr12:3356557..3356581 (25 bp)
ATACTAATGTTGCACGTCTACGATG
LOC_Os12g06900
OsAffx.31624.1.S1_at--267--3731Chr12:3356540..3356564 (25 bp)
CTACGATGGTGTGTTGCGCTTCTAT
LOC_Os12g06900
OsAffx.31624.1.S1_at--532--6251Chr12:3356515..3356539 (25 bp)
GATGGTCCGGCCATTGAGAGCAACA
LOC_Os12g06900
OsAffx.31624.1.S1_at--748--5931Chr12:3356498..3356522 (25 bp)
GAGCAACATCTACAACCGGTGGTTC
LOC_Os12g06900
OsAffx.31624.1.S1_at--587--7731Chr12:3356481..3356505 (25 bp)
GGTGGTTCCGGCTTAATGTGGTACA
LOC_Os12g06900
OsAffx.31624.1.S1_at--141--1931Chr12:3356440..3356464 (25 bp)
ACGGTGGCTGTGTACATCGACGGCA
LOC_Os12g06900
OsAffx.31624.1.S1_at--587--8231Chr12:3356419..3356443 (25 bp)
GGCAAGCAAAAGTTCTCCACCAATG
LOC_Os12g06900
OsAffx.31624.1.S1_at--176--3211Chr12:3356399..3356423 (25 bp)
CAATGTGATCCCTAGCGAGTCGTAT
LOC_Os12g06900
OsAffx.31624.1.S1_at--593--651Chr12:3356353..3356377 (25 bp)
ATGCAGCACCGTGATTGGTCCAATT
LOC_Os12g06900
Target Sequence 
GGATACGTGCCATCAGGAACATCAGGGGTATCGGTGATGCAGATCCACAATGAGGAAGGTGCAGAGCATGCGACTATACT
AATGTTGCACGTCTACGATGGTGTGTTGCGCTTCTATGATGGTCCGGCCATTGAGAGCAACATCTACAACCGGTGGTTCC
GGCTTAATGTGGTACATGATGTTAAAGCATCGACGGTGGCTGTGTACATCGACGGCAAGCAAAAGTTCTCCACCAATGTG
ATCCCTAGCGAGTCGTATTATTTTAAGTTTGGAGTGTACATGCAGCACCGTGATTGGTCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis