Browse Element(s) Details


OsAffx.31656.1.S1_at

Description tigr:9640.m00835
TID=OsAffx.31656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0897011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08960OsAffx.27789.3.S1_s_at11/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08960OsAffx.27789.2.S1_x_at5/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08970OsAffx.31656.1.S1_at11/1112+4693822..4695965hypothetical protein
LOC_Os12g08980NANA12+4697400..4698287SNARE domain containing protein, expressed
LOC_Os12g08990OsAffx.7532.1.S1_at11/1112+4701323..4701556hypothetical protein
LOC_Os12g09000Os.12097.1.S1_at11/1112+4705832..4710310thiamin biosynthesis protein, putative, expressed
LOC_Os12g09010NANA12+4711924..4712415hypothetical protein
LOC_Os12g09020NANA12+4713440..4714194retrotransposon protein, putative, unclassified
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31656.1.S1_at--766--4731Chr12:4695894..4695918 (25 bp)
GCTGTCTCGCACTCATCGTCGTTGT
LOC_Os12g08970
OsAffx.31656.1.S1_at--1009--8712Chr06:24667787..24667810 (24 bp)
TGTCTCGCACTCATCGTCGTTGTCG
NONE
OsAffx.31656.1.S1_at--466--7172Chr06:24667787..24667811 (25 bp)
GTCTCGCACTCATCGTCGTTGTCGA
NONE
OsAffx.31656.1.S1_at--251--9512Chr06:24667788..24667812 (25 bp)
TCTCGCACTCATCGTCGTTGTCGAC
NONE
OsAffx.31656.1.S1_at--559--4012Chr06:24667800..24667824 (25 bp)
CGTCGTTGTCGACCTTGGAGCCACC
NONE
OsAffx.31656.1.S1_at--683--9392Chr06:24667802..24667826 (25 bp)
TCGTTGTCGACCTTGGAGCCACCCG
NONE
OsAffx.31656.1.S1_at--1046--3513Chr12:880575..881052 (25 bp)
CATCGACTCCTCTCCAAGACCCTGA
NONE
OsAffx.31656.1.S1_at--223--10011Chr12:4693904..4693928 (25 bp)
TAGCAGTTGTACGTACATACCTAAA
LOC_Os12g08970
OsAffx.31656.1.S1_at--701--5011Chr12:4693902..4693926 (25 bp)
GCAGTTGTACGTACATACCTAAACA
LOC_Os12g08970
OsAffx.31656.1.S1_at--884--6611Chr12:4693899..4693923 (25 bp)
GTTGTACGTACATACCTAAACAGTT
LOC_Os12g08970
OsAffx.31656.1.S1_at--597--8671Chr12:4693897..4693921 (25 bp)
TGTACGTACATACCTAAACAGTTTA
LOC_Os12g08970
Target Sequence 
GCTGTCTCGCACTCATCGTCGTTGTCGACCTTGGAGCCACCCGCCGCTGCCGCTGCCGCTGCCTCATCGACTCCTCTCCA
AGACCCTGATGAACCCTGAGTTCCTCTCAACACTCAAGGCTGTTGTTGGCCCGATCTTTCGCTCCTCCTCCATGGTTATG
TCTCCTAGTGGCTTGGAGCTGGCAACACCAGATGGAGATCTTTTGAACAAAGCTGAAGCCATATCCAGAATTAACCAATG
GATACAATGCATTAGGAGAAGGGCAATCTACAGCATGAACACACTGGTAGCAGTTGTACGTACATACCTAAACAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis