Browse Element(s) Details


OsAffx.31798.1.S1_at

Description tigr:9640.m01821
TID=OsAffx.31798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18460NANA12+10672302..10679050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18470NANA12+10680137..10682408retrotransposon protein, putative, unclassified
LOC_Os12g18479NANA12+10685188..10686234hypothetical protein
LOC_Os12g18490OsAffx.19728.1.S1_at11/1112+10689322..10689681hypothetical protein
LOC_Os12g18500OsAffx.8585.1.S1_at1/1112+10692896..10694936retrotransposon, putative, centromere-specific
LOC_Os12g18510OsAffx.31798.1.S1_at11/1112+10698358..10701432hypothetical protein
LOC_Os12g18510OsAffx.4864.1.S1_at1/1112+10698358..10701432hypothetical protein
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31798.1.S1_at--477--10851Chr12:10699207..10699231 (25 bp)
TTGGGATGCCATCAGTAGCCTACAC
LOC_Os12g18510
OsAffx.31798.1.S1_at--1147--9971Chr12:10699192..10699216 (25 bp)
TAGCCTACACGAGGAAGGCCATGAT
LOC_Os12g18510
OsAffx.31798.1.S1_at--896--8431Chr12:10699176..10699200 (25 bp)
GGCCATGATCAAAGGCGCCAGTGGT
LOC_Os12g18510
OsAffx.31798.1.S1_at--223--3871Chr12:10698863..10699109 (25 bp)
CTGATGGCGGTATTGATGGTCGAAT
LOC_Os12g18510
OsAffx.31798.1.S1_at--1123--8091Chr12:10698826..10698850 (25 bp)
GGACCGTCAACATCATTAACACCGT
LOC_Os12g18510
OsAffx.31798.1.S1_at--164--3591Chr12:10698813..10698837 (25 bp)
CATTAACACCGTCATAGGAGGAGAT
LOC_Os12g18510
OsAffx.31798.1.S1_at--1025--6171Chr12:10698796..10698820 (25 bp)
GAGGAGATGACCTCGGCGACCCTTG
LOC_Os12g18510
OsAffx.31798.1.S1_at--825--1731Chr12:10698511..10698535 (25 bp)
ACCATCGTTGTCCATGGCCACAGAT
LOC_Os12g18510
OsAffx.31798.1.S1_at--866--4311Chr12:10698500..10698524 (25 bp)
CCATGGCCACAGATTTAGCTCTTGT
LOC_Os12g18510
OsAffx.31798.1.S1_at--198--10351Chr12:10698487..10698511 (25 bp)
TTTAGCTCTTGTGCCGTCGCCAGCA
LOC_Os12g18510
OsAffx.31798.1.S1_at--366--10791Chr12:10698420..10698444 (25 bp)
TTGATTGTTGTGGACTTCGTTGCGT
LOC_Os12g18510
Target Sequence 
TTGGGATGCCATCAGTAGCCTACACGAGGAAGGCCATGATCAAAGGCGCCAGTGGTGGTTCGGTCGAACCCTGGGCCCCA
CCTCCTGGCCTCTCCTTTGGCAGGGACACTGACTGGTGGGCCCTGATGGCGGTATTGATGGTCGAATATTATGATTTAAG
GACCGTCAACATCATTAACACCGTCATAGGAGGAGATGACCTCGGCGACCCTTGCCACTATGGGTGGCGGTGGCTCCCTC
AGGTGTCCTCCCGGCCCCCTGTCCCTCCTTGTCTTCCTCCCCCGTTGCCACTGGAGGAGGAGCACGGCTTCAGGATGGGG
ATGGTGACAACTAGGTGGCCGGGGGCCGCCACGGCGACAGGAAATGGAGACAGGGAGCGTGACAGGGAGAGCGAGGATGA
AGGGGACGCGCCACCATCGTTGTCCATGGCCACAGATTTAGCTCTTGTGCCGTCGCCAGCACGAGGGAGGAGGGAGGAGT
GTGAGGGGACGAGGGCATTTTGGTTGATTGTTGTGGACTTCGTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis