Browse Element(s) Details


OsAffx.31885.2.S1_x_at

Description tigr:9640.m02491
TID=OsAffx.31885.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2602011/11hypothetical protein
LOC_Os08g2029010/11transposase, putative
LOC_Os01g142602/11hAT family dimerisation domain containing protein
LOC_Os06g223002/11hAT family dimerisation domain containing protein
LOC_Os09g266802/11hAT family dimerisation domain containing protein
LOC_Os02g562902/11hypothetical protein
LOC_Os05g095702/11hAT family dimerisation domain containing protein
LOC_Os07g222702/11hAT family dimerisation domain containing protein
LOC_Os07g476102/11hAT family dimerisation domain containing protein
LOC_Os12g395402/11hAT family dimerisation domain containing protein
LOC_Os01g332401/11Transposable element protein, putative, MuDR
LOC_Os12g234301/11hAT family dimerisation domain containing protein
LOC_Os01g332601/11ABC-2 type transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25990OsAffx.5954.5.S1_x_at2/1112+15087992..15092943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25990OsAffx.5954.3.S1_x_at2/1112+15087992..15092943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25990OsAffx.5954.1.S1_x_at2/1112+15087992..15092943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25990OsAffx.5954.2.S1_at1/1112+15087992..15092943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26000OsAffx.1197.1.S1_x_at3/1112+15095995..15096339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26010NANA12+15108914..15110887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26020OsAffx.31885.2.S1_x_at11/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.3.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.1.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26030OsAffx.7704.1.S1_s_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26030OsAffx.7704.1.S1_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26040OsAffx.19831.1.S1_at11/1112+15124017..15125336expressed protein
LOC_Os12g26050OsAffx.19832.1.S1_at11/1112+15129078..15129791hypothetical protein
LOC_Os12g26060Os.48077.1.A1_at10/1112+15131743..15137678Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os12g26070Os.47463.1.S1_x_at6/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26070Os.14491.2.S1_x_at5/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31885.2.S1_x_at--79--1372Chr12:15112493..15112517 (25 bp)
AGAGCTAAGGGCACAGGTCCACAGT
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--668--7792Chr12:15112478..15112502 (25 bp)
GGTCCACAGTCTCGCAATGTTGATA
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--873--5351Chr12:15112448..15112472 (25 bp)
GAAGAGACCGAACATAGCCCAGACT
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--432--4552Chr12:15112322..15112342 (21 bp)
GCCCTATCCAATTCACTGGTGAGGC
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--618--77713Chr12:13245166..13245190 (25 bp)
GGTGCTCCAAGCTCTCAACGAACTA
LOC_Os12g23430
OsAffx.31885.2.S1_x_at--507--5372Chr12:15112157..15112181 (25 bp)
GAACTACCGTTTCACCGAGTGACCA
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--1069--5613Chr07:3212614..3212646 (24 bp)
GACAACATCTTGACATACCACAGGA
NONE
OsAffx.31885.2.S1_x_at--138--2912Chr12:15112054..15112078 (25 bp)
AAGGTATGCGTATAATCGTCCCCAA
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--726--4532Chr12:15111985..15112009 (25 bp)
GCCCCAGTGGTACGCTCAATTGTAT
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--349--3212Chr12:15111910..15111934 (25 bp)
CAAGGCAGGGTTGCTACAGTCGCAT
LOC_Os12g26020
OsAffx.31885.2.S1_x_at--762--107712Chr09:16206518..16206542 (25 bp)
TTGATGCTCATGTCCACAGAGGAGT
LOC_Os09g26680
Target Sequence 
AGAGCTAAGGGCACAGGTCCACAGTCTCGCAATGTTGATAGCGATGAAGAGACCGAACATAGCCCAGACTACCAAGAGTC
CAATGATAGTAGCTCAAGAACTGATACAGATGATGGAGACGATGGTGGTGAAGGAGGAGAAGGAACCACTGAAGTGCCTT
CTGGGGGTCACCACAGCCCTATCCAATTCACTGGTGAGGCCGACTTCACTCACGCGACTCAGGACCGTGATCACGGTGCT
CCAAGCTCTCAACGAACTACCGTTTCACCGAGTGACCAACAACAACGACAACATCTTGACATACCACAGGATAGCTACAG
CTCATTCAGTGCCTCTAGCATTGAAAGTGGCTATCCAAGGTATGCGTATAATCGTCCCCAACCTTCTGATTATCCCCCTC
CTACATGGGTGTACGAGTGGCAAGAGCCCCAGTGGTACGCTCAATTGTATGCTCAATGGCAAACAACAGCATCATGGACA
GGTCAAAGTTGGGAGGAATACAAGGCAGGGTTGCTACAGTCGCATGGATTGATGCTCATGTCCACAGAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31885.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis