Browse Element(s) Details


OsAffx.31889.1.S1_at

Description tigr:9640.m02525
TID=OsAffx.31889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2635011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26330OsAffx.7705.1.S1_at11/1112+15371750..15372052hypothetical protein
LOC_Os12g26340OsAffx.22848.3.S1_x_at1/1112+15384242..15390373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26350OsAffx.31889.1.S1_at11/1112+15394827..15395429hypothetical protein
LOC_Os12g26360OsAffx.19837.1.S1_at1/1112+15397437..15397931hypothetical protein
LOC_Os12g26370NANA12+15402823..15405007retrotransposon protein, putative, unclassified
LOC_Os12g26380OsAffx.19837.1.S1_at11/1112+15409792..15410981dirigent protein, putative, expressed
LOC_Os12g26390OsAffx.31890.1.S1_at11/1112+15418872..15421109expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31889.1.S1_at--1076--6651Chr12:15394901..15394925 (25 bp)
GTTGCAGCCACCAGGGCGTACTGGT
LOC_Os12g26350
OsAffx.31889.1.S1_at--1131--4551Chr12:15394936..15394960 (25 bp)
GCGCCGTTCTATCTGCTGATTTGTG
LOC_Os12g26350
OsAffx.31889.1.S1_at--640--6731Chr12:15394941..15394965 (25 bp)
GTTCTATCTGCTGATTTGTGGGCGA
LOC_Os12g26350
OsAffx.31889.1.S1_at--815--471Chr12:15394946..15394970 (25 bp)
ATCTGCTGATTTGTGGGCGATTTGG
LOC_Os12g26350
OsAffx.31889.1.S1_at--808--5691Chr12:15394981..15395005 (25 bp)
GACTTCAATCGGCTGATTCAATGGG
LOC_Os12g26350
OsAffx.31889.1.S1_at--135--3051Chr12:15394987..15395011 (25 bp)
AATCGGCTGATTCAATGGGCCAAAA
LOC_Os12g26350
OsAffx.31889.1.S1_at--184--591Chr12:15395001..15395025 (25 bp)
ATGGGCCAAAAAAGGATTGATCTTC
LOC_Os12g26350
OsAffx.31889.1.S1_at--555--51Chr12:15395016..15395040 (25 bp)
ATTGATCTTCCATGTGGAGCCTCGA
LOC_Os12g26350
OsAffx.31889.1.S1_at--740--9231Chr12:15395024..15395048 (25 bp)
TCCATGTGGAGCCTCGAGGCAGATC
LOC_Os12g26350
OsAffx.31889.1.S1_at--816--6171Chr12:15395039..15395063 (25 bp)
GAGGCAGATCGATTTAGTTGAGGCT
LOC_Os12g26350
OsAffx.31889.1.S1_at--808--6391Chr12:15395045..15395069 (25 bp)
GATCGATTTAGTTGAGGCTGTGCTG
LOC_Os12g26350
Target Sequence 
GTTGCAGCCACCAGGGCGTACTGGTCGCCACCGCCGCGCCGTTCTATCTGCTGATTTGTGGGCGATTTGGGATGGGATCA
GACTTCAATCGGCTGATTCAATGGGCCAAAAAAGGATTGATCTTCCATGTGGAGCCTCGAGGCAGATCGATTTAGTTGAG
GCTGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis