Browse Element(s) Details


OsAffx.3197.1.S1_at

Description tigr:9631.m01030
TID=OsAffx.3197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11120Os.21849.1.S1_at11/113+5700219..5707714Methionyl-tRNA synthetase, putative, expressed
LOC_Os03g11130OsAffx.22433.3.S1_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11130OsAffx.22433.3.S1_s_at8/113+5708710..5712612hypothetical protein
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3197.1.S1_at--548--4671Chr03:5727329..5727353 (25 bp)
GCGGGTACTACTACTTCGCCTTCGG
LOC_Os03g11150
OsAffx.3197.1.S1_at--600--2011Chr03:5727320..5727344 (25 bp)
ACTACTTCGCCTTCGGCTGGGAGTG
LOC_Os03g11150
OsAffx.3197.1.S1_at--244--10631Chr03:5727264..5727288 (25 bp)
TTCGACAAGTCGGTGGCGCTACAGG
LOC_Os03g11150
OsAffx.3197.1.S1_at--639--9511Chr03:5727201..5727225 (25 bp)
TCTCTGAGGTTTCGAGACCCCACTA
LOC_Os03g11150
OsAffx.3197.1.S1_at--392--8391Chr03:5727017..5727041 (25 bp)
GGCGCAGAGCCAGCGAACGTCGTGC
LOC_Os03g11150
OsAffx.3197.1.S1_at--174--6251Chr03:5726250..5726274 (25 bp)
GATGTGGCGGACGACCAATGTCATT
LOC_Os03g11150
OsAffx.3197.1.S1_at--630--8331Chr03:5726245..5726269 (25 bp)
GGCGGACGACCAATGTCATTAAGAT
LOC_Os03g11150
OsAffx.3197.1.S1_at--521--791Chr03:5726199..5726223 (25 bp)
ATGTGTGTTACATTGACAAGAGAAT
LOC_Os03g11150
OsAffx.3197.1.S1_at--1083--5591Chr03:5726185..5726209 (25 bp)
GACAAGAGAATGTCGAGTAGGTCCG
LOC_Os03g11150
OsAffx.3197.1.S1_at--85--9871Chr03:5726168..5726192 (25 bp)
TAGGTCCGAGGCAAAATGCCCCGGT
LOC_Os03g11150
OsAffx.3197.1.S1_at--737--5571Chr03:5726131..5726155 (25 bp)
GAAAGGCCCAAAATCTGCGCGGAAA
LOC_Os03g11150
Target Sequence 
GCGGGTACTACTACTTCGCCTTCGGCTGGGAGTGGGAGAAGCCGCTGCTGGAGGGGACGCTGGTGTTCGACAAGTCGGTG
GCGCTACAGGGGGTGGCGGCTCCGCCAAGTGGCGGATCCACCATGGGGTCTCTGAGGTTTCGAGACCCCACTACCCATCC
ACCCTGGCTCCCGGAGCCGGGGGAGGCCGCCGGCGGCGCAGAGCCAGCGAACGTCGTGCGCGGCGTGGTTGGCCGAAGAT
GTGGCGGACGACCAATGTCATTAAGATTGGGAGGAAAGGAAGTACAAAATGTGTGTTACATTGACAAGAGAATGTCGAGT
AGGTCCGAGGCAAAATGCCCCGGTCCCGTGAACAAAGAAAGGCCCAAAATCTGCGCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis