Browse Element(s) Details


OsAffx.31974.1.S1_at

Description tigr:9640.m03127
TID=OsAffx.31974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3220010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32170NANA12+19385421..19386206hypothetical protein
LOC_Os12g32180Os.49374.1.S1_at11/1112+19396282..19399917Cornichon protein, expressed
LOC_Os12g32190Os.50052.2.S1_at10/1112+19400549..19402236expressed protein
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31974.1.S1_at--618--3351Chr12:19406833..19406857 (25 bp)
CACGAACGTGGCGATTGTTGCTATT
LOC_Os12g32200
OsAffx.31974.1.S1_at--1108--10771Chr12:19406847..19406871 (25 bp)
TTGTTGCTATTTCAGCGCCCGAAAA
LOC_Os12g32200
OsAffx.31974.1.S1_at--38--10831Chr12:19406898..19406922 (25 bp)
TTGTCGCTCGCGTGTCAGAGGAAGT
LOC_Os12g32200
OsAffx.31974.1.S1_at--58--6951Chr12:19407042..19407066 (25 bp)
GTAGTTCTGTCTTGATGGCTTCTCC
LOC_Os12g32200
OsAffx.31974.1.S1_at--611--8491Chr12:19407057..19407081 (25 bp)
TGGCTTCTCCATTGGCTGTTGGTGA
LOC_Os12g32200
OsAffx.31974.1.S1_at--298--5951Chr12:19407106..19407130 (25 bp)
GAGCACACAAGACATCCCTGAAGTT
LOC_Os12g32200
OsAffx.31974.1.S1_at--1006--7391Chr12:19407132..19407156 (25 bp)
GTGATGAGACATCCCAGCCTGGTCA
LOC_Os12g32200
OsAffx.31974.1.S1_at--270--7631NONE
GGGACAAGGATCTCTACACCGAAGA
NONE
OsAffx.31974.1.S1_at--439--7031Chr12:19409127..19409151 (25 bp)
GTACAGATCTCCATTTTCTTCGACA
LOC_Os12g32200
OsAffx.31974.1.S1_at--248--10331Chr12:19409174..19409198 (25 bp)
TTTACCTGTTCATCGGAGTGGAGCC
LOC_Os12g32200
OsAffx.31974.1.S1_at--559--8211Chr12:19409213..19409237 (25 bp)
GGAATGCCTCTGACCTAATGGAGAT
LOC_Os12g32200
Target Sequence 
CACGAACGTGGCGATTGTTGCTATTTCAGCGCCCGAAAACGAGGCGACGACACCGACGAGTGACCTTGTCGCTCGCGTGT
CAGAGGAAGTTGTGGGAAGTTCATGTGATGGTGAGATGCAAGAAACCGCTGTGGTGGATGATACCATGAGGGAACTAAGT
GATGCAAACATGGATGAAGATGTGCAACACCATGATCAAAGAGTTGTTTGTAGTTCTGTCTTGATGGCTTCTCCATTGGC
TGTTGGTGATTATGAGGATGTAATGTCCAGCGGGAGCACACAAGACATCCCTGAAGTTTGTGATGAGACATCCCAGCCTG
GTCAGGAGCATGATCAGTCTGATGGGTTTGAGGCAAAAGTAATTTCTGGGGACAAGGATCTCTACACCGAAGAACACGTA
AGGCAACAGCTCGAAACATTAAGAACAATAACAGGGTACAGATCTCCATTTTCTTCGACACTCGAAGGTGAGCTGGCTGC
CCTTTACCTGTTCATCGGAGTGGAGCCCCCTGTCAGCTCGAGGAATGCCTCTGACCTAATGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis