Browse Element(s) Details


OsAffx.31976.1.S1_s_at

Description tigr:9640.m03136
TID=OsAffx.31976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3229011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31976.1.S1_s_at--37--6191Chr12:19467403..19467427 (25 bp)
GAGGAAAGGTCTGCCAGTAGAACCT
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--79--5411Chr12:19467384..19467408 (25 bp)
GAACCTTTATTGTGTTTCTCCACCT
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--998--1751Chr12:19467363..19467387 (25 bp)
ACCTCGCATCGATGGGCCGAAGTGC
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--302--6411Chr12:19467022..19467046 (25 bp)
GATCTACTATCCCAAGGGCTTTGAG
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--909--4671Chr12:19466970..19466994 (25 bp)
GCGGCTTCATTCAGGCAGCTGTACT
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--451--5911Chr12:19466917..19466941 (25 bp)
GAGCTCTCCCACATCAAATGATGCT
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--102--5251Chr12:19466840..19466864 (25 bp)
GAATCACTTACAGATGCAGTTGTGG
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--478--5031Chr12:19466825..19466849 (25 bp)
GCAGTTGTGGAAGTTCTGACCATTT
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--815--2891Chr12:19466797..19466821 (25 bp)
AAGGTGCATGCATCCTATGAAACAC
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--105--9331Chr12:19466755..19466779 (25 bp)
TCCCAGTGTGTAGGTGTGGCATCCA
LOC_Os12g32290
OsAffx.31976.1.S1_s_at--433--7531Chr12:19466740..19466764 (25 bp)
GTGGCATCCACCGACAGATCAAGAA
LOC_Os12g32290
Target Sequence 
GAGGAAAGGTCTGCCAGTAGAACCTTTATTGTGTTTCTCCACCTCGCATCGATGGGCCGAAGTGCAATTGCAAAATCGGC
TGGTCTGCTCCGGGAAATCAAGAACAAACAAAGCTCTAACCTTATGAGCCGGGTGCAGCCTTCAGAAGCAAGGTCAGCGG
AGACAGCATTGTGGGTGCCACACCCAAGAACAGGGATCTACTATCCCAAGGGCTTTGAGTGGGTCATGGAGGATGTCCCC
AGCAGCGCGGCTTCATTCAGGCAGCTGTACTGGCTCAGGAGCGGCGACGCAGAGACGGCGAGCTCTCCCACATCAAATGA
TGCTGCTGCCTTTGATCACCCATTTGTGTAGAAGCATGAGAGGCTTTCCACTGGAAGAATCACTTACAGATGCAGTTGTG
GAAGTTCTGACCATTTTGAAAGGTGCATGCATCCTATGAAACACTTAACAGTTGTTCTGATTCCCAGTGTGTAGGTGTGG
CATCCACCGACAGATCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31976.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis