Browse Element(s) Details


OsAffx.31994.1.S1_at

Description tigr:9640.m03199
TID=OsAffx.31994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3287011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31994.1.S1_at--985--9031Chr12:19837910..19837934 (25 bp)
TGCAGCTGACGACGTGGTTCATATC
LOC_Os12g32870
OsAffx.31994.1.S1_at--824--2791Chr12:19837858..19837882 (25 bp)
AAGTCTCCTAAAGCCGTCAACGAGT
LOC_Os12g32870
OsAffx.31994.1.S1_at--1125--9171Chr12:19837853..19837877 (25 bp)
TCCTAAAGCCGTCAACGAGTTTGTT
LOC_Os12g32870
OsAffx.31994.1.S1_at--565--7251Chr12:19837780..19837804 (25 bp)
GTCCGCGACAACGACTCATCGAAGG
LOC_Os12g32870
OsAffx.31994.1.S1_at--535--9591Chr12:19837466..19837789 (25 bp)
TCATCGAAGGCTACCGGGCTGGGTC
LOC_Os12g32870
OsAffx.31994.1.S1_at--679--2051Chr12:19837430..19837454 (25 bp)
ACTTCAGCCATTGTCGCTAATGATT
LOC_Os12g32870
OsAffx.31994.1.S1_at--434--5171Chr12:19837393..19837417 (25 bp)
GCAAGAATGCGGTATGTACACTACA
LOC_Os12g32870
OsAffx.31994.1.S1_at--811--8731Chr12:19837379..19837403 (25 bp)
TGTACACTACATGACCGCTGGAGCA
LOC_Os12g32870
OsAffx.31994.1.S1_at--162--2111Chr12:19837371..19837395 (25 bp)
ACATGACCGCTGGAGCAGGTCGCCG
LOC_Os12g32870
OsAffx.31994.1.S1_at--848--9251Chr12:19837309..19837333 (25 bp)
TCCTCAGTCCCCTTCCTAGAGAGGG
LOC_Os12g32870
OsAffx.31994.1.S1_at--1005--2151Chr12:19836925..19836949 (25 bp)
ACAGCGGCAGACTTGGTGGGCGACA
LOC_Os12g32870
Target Sequence 
TGCAGCTGACGACGTGGTTCATATCGCGCATGCCCTTTGTAAGGTTTGCGCCAAGTCTCCTAAAGCCGTCAACGAGTTTG
TTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCAATTGATTGGGACCTCGTCCGCGACAACGACTCATCGAAGGCTACC
GGGCTGGGTCGTGATCCCCTTACTTCAGCCATTGTCGCTAATGATTCATGGTGGGAAAGCAAGAATGCGGTATGTACACT
ACATGACCGCTGGAGCAGGTCGCCGGAGGGTGCAGGTCCGCTGGGTTGGCGGCAAGGCTTCCTCCTCAGTCCCCTTCCTA
GAGAGGGGGCGGCACGGTGGGTCTCGCCTGGCTCCGGCGAGCGACGCAGTGGAGGTGATGCCGACGGCGGTAGCGGTCGC
GCCCGGTGGCAGTCGGCAAGGCAGGCGCCTATGGCGTCGGTTGGCCGGGGGGTGGTGGCAGCGGTGGAGGTTGCCGACTC
GGTGGGCGACAGCGGCAGACTTGGTGGGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis