Browse Element(s) Details


OsAffx.32000.1.S1_at

Description tigr:9640.m03223
TID=OsAffx.32000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3311010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32000.1.S1_at--844--1151Chr12:20012207..20012231 (25 bp)
AGTCAGTGGGGCAATAGAGTCAATT
LOC_Os12g33110
OsAffx.32000.1.S1_at--1044--7731Chr12:20012182..20012206 (25 bp)
GGTGGTGGAGACGAAGTCTCCCATA
LOC_Os12g33110
OsAffx.32000.1.S1_at--431--5991Chr12:20012175..20012199 (25 bp)
GAGACGAAGTCTCCCATAAGCGGCG
LOC_Os12g33110
OsAffx.32000.1.S1_at--379--5791Chr12:20012173..20012197 (25 bp)
GACGAAGTCTCCCATAAGCGGCGTG
LOC_Os12g33110
OsAffx.32000.1.S1_at--916--4091Chr12:20012171..20012195 (25 bp)
CGAAGTCTCCCATAAGCGGCGTGGA
LOC_Os12g33110
OsAffx.32000.1.S1_at--430--351NONE
ATAAGCGGCGTGGAGTCGGAGAAGA
NONE
OsAffx.32000.1.S1_at--227--2791Chr12:20011577..20011601 (25 bp)
AAGAGTTTGCCAAAGTTGTCGATGA
LOC_Os12g33110
OsAffx.32000.1.S1_at--730--6071Chr12:20011575..20011599 (25 bp)
GAGTTTGCCAAAGTTGTCGATGAGA
LOC_Os12g33110
OsAffx.32000.1.S1_at--642--10671Chr12:20011571..20011595 (25 bp)
TTGCCAAAGTTGTCGATGAGAAAAT
LOC_Os12g33110
OsAffx.32000.1.S1_at--673--4051Chr12:20011558..20011582 (25 bp)
CGATGAGAAAATTGGACACCGAGAA
LOC_Os12g33110
OsAffx.32000.1.S1_at--519--8851Chr12:20011555..20011579 (25 bp)
TGAGAAAATTGGACACCGAGAAGAA
LOC_Os12g33110
Target Sequence 
AGTCAGTGGGGCAATAGAGTCAATTGGTGGTGGAGACGAAGTCTCCCATAAGCGGCGTGGAGTCGGAGAAGAAGAGTTTG
CCAAAGTTGTCGATGAGAAAATTGGACACCGAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis