Browse Element(s) Details


OsAffx.32040.1.S1_at

Description tigr:9640.m03453
TID=OsAffx.32040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3568010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35640OsAffx.7801.1.S1_at11/1112+21633321..21635926adenosine 5'-phosphosulfate reductase 6, putative, expressed
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35660NANA12+21646619..21649924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35670Os.7043.1.S1_at11/1112+21658296..21659192Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35680OsAffx.32040.1.S1_at10/1112+21659214..21662145expressed protein
LOC_Os12g35690Os.11080.1.S1_at11/1112+21666549..21667544Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35700NANA12+21668972..21670399hypothetical protein
LOC_Os12g35710Os.18286.1.S1_s_at11/1112+21677787..21680406extensin-like domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32040.1.S1_at--579--1471Chr12:21660735..21660759 (25 bp)
AGAATGGCTGAGTCACCCAACCAAA
LOC_Os12g35680
OsAffx.32040.1.S1_at--553--1411Chr12:21660520..21660544 (25 bp)
AGAAATCTCATGCTTGTTACAACTT
LOC_Os12g35680
OsAffx.32040.1.S1_at--251--2211Chr12:21660502..21660526 (25 bp)
ACAACTTCCAAGACCATTTTCATGG
LOC_Os12g35680
OsAffx.32040.1.S1_at--322--171Chr12:21660487..21660511 (25 bp)
ATTTTCATGGACTCATCAGACATCA
LOC_Os12g35680
OsAffx.32040.1.S1_at--584--3411Chr12:21660471..21660495 (25 bp)
CAGACATCATCAGTGCTAATAGCTT
LOC_Os12g35680
OsAffx.32040.1.S1_at--99--4831Chr12:21660457..21660481 (25 bp)
GCTAATAGCTTACTAAGGCCTCCTT
LOC_Os12g35680
OsAffx.32040.1.S1_at--669--2951NONE
AAGGCCTCCTTCAATGAGAGTCAGA
NONE
OsAffx.32040.1.S1_at--874--8251Chr12:21659403..21659427 (25 bp)
GGCAGCCAGATCTACAAGCTGTTGT
LOC_Os12g35680
OsAffx.32040.1.S1_at--373--2931Chr12:21659346..21659370 (25 bp)
AAGGAATGGTTTGCAGCTTCAGATC
LOC_Os12g35680
OsAffx.32040.1.S1_at--432--451Chr12:21659318..21659342 (25 bp)
ATCTACATCTACCACAATGCCAAGG
LOC_Os12g35680
OsAffx.32040.1.S1_at--255--4931Chr12:21659289..21659313 (25 bp)
GCTTGAATTTTTCTCCACATTTCAG
LOC_Os12g35680
Target Sequence 
AGAATGGCTGAGTCACCCAACCAAAAATTTCATCACAGCATTTTTCAGAAATCTCATGCTTGTTACAACTTCCAAGACCA
TTTTCATGGACTCATCAGACATCATCAGTGCTAATAGCTTACTAAGGCCTCCTTCAATGAGAGTCAGAGACTACAGATCA
GAACAACAACAGGGGGCAGCCAGATCTACAAGCTGTTGTGCAATGAACAGAACCTTCATCTCCAACAATGGAAGGAATGG
TTTGCAGCTTCAGATCTACATCTACATCTACCACAATGCCAAGGCAAAGCTTGAATTTTTCTCCACATTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis