Browse Element(s) Details


OsAffx.32091.1.S1_at

Description tigr:9640.m03826
TID=OsAffx.32091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g392508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32091.1.S1_at--527--5391NONE
GAAGCAGAAGCACCGTATGCACAGT
NONE
OsAffx.32091.1.S1_at--347--5391NONE
GAAGCACCGTATGCACAGTACACAT
NONE
OsAffx.32091.1.S1_at--255--1511NONE
AGCACCGTATGCACAGTACACATGC
NONE
OsAffx.32091.1.S1_at--511--6911Chr12:24127678..24127702 (25 bp)
GTATGCACAGTACACATGCAAGCAC
LOC_Os12g39250
OsAffx.32091.1.S1_at--631--7031Chr12:24127687..24127711 (25 bp)
GTACACATGCAAGCACAAAGCGTGC
LOC_Os12g39250
OsAffx.32091.1.S1_at--1044--2671Chr12:24127704..24127728 (25 bp)
AAGCGTGCACAAACAGCTACTCCAG
LOC_Os12g39250
OsAffx.32091.1.S1_at--1029--7331Chr12:24127708..24127732 (25 bp)
GTGCACAAACAGCTACTCCAGAAAT
LOC_Os12g39250
OsAffx.32091.1.S1_at--143--3291Chr12:24127713..24127737 (25 bp)
CAAACAGCTACTCCAGAAATCGTTT
LOC_Os12g39250
OsAffx.32091.1.S1_at--630--10291Chr12:24127739..24127763 (25 bp)
TTTCTGGGACAAAGACTTTCCTCCA
LOC_Os12g39250
OsAffx.32091.1.S1_at--271--7631Chr12:24127744..24127768 (25 bp)
GGGACAAAGACTTTCCTCCAGAAAT
LOC_Os12g39250
OsAffx.32091.1.S1_at--884--2191Chr12:24127747..24127771 (25 bp)
ACAAAGACTTTCCTCCAGAAATCGA
LOC_Os12g39250
Target Sequence 
GAAGCAGAAGCACCGTATGCACAGTACACATGCAAGCACAAAGCGTGCACAAACAGCTACTCCAGAAATCGTTTTTTTCT
GGGACAAAGACTTTCCTCCAGAAATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis