Browse Element(s) Details


OsAffx.32113.1.S1_s_at

Description tigr:9640.m03918
TID=OsAffx.32113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transcription factor KANADI4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4010011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40060Os.45957.4.S1_x_at1/1112+24734024..24738825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g40070OsAffx.32111.1.S1_at11/1112+24740088..24745206B3 DNA binding domain containing protein
LOC_Os12g40080OsAffx.20044.1.S1_at11/1112+24747415..24749722B3 DNA binding domain containing protein
LOC_Os12g40090NANA12+24751137..24752756B3 DNA binding domain containing protein
LOC_Os12g40100OsAffx.32113.1.S1_s_at11/1112+24759591..24764791expressed protein
LOC_Os12g40100OsAffx.32113.1.S1_at7/1112+24759591..24764791expressed protein
LOC_Os12g40109NANA12+24775690..24776464NA
LOC_Os12g40120NANA12+24784514..24786500B3 DNA binding domain containing protein, expressed
LOC_Os12g40130OsAffx.20045.1.S1_at11/1112+24787558..24788961Adenine phosphoribosyltransferase 1, putative
LOC_Os12g40140Os.53520.1.A1_at11/1112+24789724..24790967F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32113.1.S1_s_at--978--8191Chr12:24761275..24761299 (25 bp)
GGAAGTCCCAGTCACCAGGAGAGCA
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--954--9031Chr12:24761245..24761269 (25 bp)
TGCAGGATCTTCAGAGCGGTTGGCC
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--758--10531Chr12:24761236..24761260 (25 bp)
TTCAGAGCGGTTGGCCTCCTCATTA
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--429--151Chr12:24761215..24761239 (25 bp)
ATTACCTCGCATCATCTGAATCTGA
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--423--9011Chr12:24761199..24761223 (25 bp)
TGAATCTGATCACCTCCTGATGGAG
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--61--1591Chr12:24759999..24760023 (25 bp)
AGCTCCCTCGACTGGCTGCTGGCGT
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--1046--1511Chr12:24759962..24759986 (25 bp)
AGCAGCACAAGTACGGTGACCGCCA
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--605--9831Chr12:24759912..24759936 (25 bp)
TACACGGCGGCTCACCGTGGTCAAG
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--724--1111Chr12:24759844..24759868 (25 bp)
AGTGAAGGATCGTCGACCGAGCCTG
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--775--6391Chr12:24759837..24759861 (25 bp)
GATCGTCGACCGAGCCTGGAGATGA
LOC_Os12g40100
OsAffx.32113.1.S1_s_at--407--3391Chr12:24759777..24759801 (25 bp)
CAGCGAAGCAGCGTGGAGTACTCTT
LOC_Os12g40100
Target Sequence 
GGAAGTCCCAGTCACCAGGAGAGCAGCAGCTGCAGGATCTTCAGAGCGGTTGGCCTCCTCATTACCTCGCATCATCTGAA
TCTGATCACCTCCTGATGGAGCAAAGGTTAATGCAGGAGATATGGAAGGGTGCAGCAGCAGCAGCAGCACACGATCACCA
TGATCAAGAAGCAGCCACCGCCGCTGCTCTCCATCACGATCAGCACGTCCGCCGTCTCGACCACATCGTCGCCGGCCGGC
CACCGCCGCCGCCGGCGTCGAGCAGCAGCGGCGGCGGCGGCGACACGATGGCCAGCTCCCTCGACTGGCTGCTGGCGTCG
CGGCGGCAGGAGCAGCACAAGTACGGTGACCGCCACTACGACGACGACGACGGCGGCTACTACACGGCGGCTCACCGTGG
TCAAGCTGCGGCGGCCATGTCGGCGGCGGCGGCGGCGGCGAGCGGCGTAGTGAAGGATCGTCGACCGAGCCTGGAGATGA
GCCTGGGGAGGCAGGGGTGGGAGATCAGCATGGAGCAGCGAAGCAGCGTGGAGTACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis