Browse Element(s) Details


OsAffx.32117.1.S1_x_at

Description tigr:9640.m03935
TID=OsAffx.32117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4027011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein
LOC_Os12g40230OsAffx.25936.1.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.7.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.2.S1_x_at7/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.5.S1_x_at2/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40240OsAffx.20049.1.S1_x_at11/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_at5/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_x_at4/1112+24872172..24873881hypothetical protein
LOC_Os12g40250Os.10827.1.S1_x_at9/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40250Os.46055.2.S1_x_at6/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40260NANA12+24881964..24883484transducin family protein, putative, expressed
LOC_Os12g40270OsAffx.32117.1.S1_x_at11/1112+24889801..24890274hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32117.1.S1_x_at--1006--1671Chr12:24889831..24889855 (25 bp)
AGCCGGTTCGACCAGGAGGCGTTCG
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--312--3951Chr12:24889834..24889858 (25 bp)
CGGTTCGACCAGGAGGCGTTCGCCG
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--48--4171Chr12:24889854..24889878 (25 bp)
CGCCGAGGAGCTGAATCGCATCATC
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--437--4491Chr12:24889855..24889879 (25 bp)
GCCGAGGAGCTGAATCGCATCATCG
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--234--4071Chr12:24889857..24889881 (25 bp)
CGAGGAGCTGAATCGCATCATCGGT
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--408--5891Chr12:24889861..24889885 (25 bp)
GAGCTGAATCGCATCATCGGTGGGC
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--424--9011Chr12:24889865..24889889 (25 bp)
TGAATCGCATCATCGGTGGGCTGGC
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--1041--7831Chr12:24889928..24889952 (25 bp)
GGTACGCCCGCCTGAGCGAGGCGGA
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--415--2631Chr12:24889990..24890014 (25 bp)
AACCTCGACCGTGCGTGCAGGAGCA
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--116--1791Chr12:24889997..24890021 (25 bp)
ACCGTGCGTGCAGGAGCACCAGGGT
LOC_Os12g40270
OsAffx.32117.1.S1_x_at--739--4151Chr12:24890044..24890068 (25 bp)
CGCCGCATCAGGTTCCGCTTGGTGG
LOC_Os12g40270
Target Sequence 
AGCCGGTTCGACCAGGAGGCGTTCGCCGAGGAGCTGAATCGCATCATCGGTGGGCTGGCCGCCGCCGGCGACGACGATCC
CCGGGCGGCGGAGCGGCGGTACGCCCGCCTGAGCGAGGCGGACCGGGAGGAGCTCCGGTGCGTGCGCCGCGCCTTCGCCA
ACCTCGACCGTGCGTGCAGGAGCACCAGGGTGCCGCCGGCGGGGAGGCCCGCGCGCCGCATCAGGTTCCGCTTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32117.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis