Browse Element(s) Details


OsAffx.32157.1.S1_at

Description tigr:9640.m04172
TID=OsAffx.32157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified
LOC_Os12g42460OsAffx.25357.1.S1_at1/1112+26351256..26353811hypothetical protein
LOC_Os12g42470OsAffx.32157.1.S1_at11/1112+26354035..26354659hypothetical protein
LOC_Os12g42480OsAffx.7866.1.S1_x_at11/1112+26358002..26358809hypothetical protein
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32157.1.S1_at--896--7211Chr12:26354505..26354525 (21 bp)
GTCGAGCATCTCTCTTACCAAATAG
LOC_Os12g42470
OsAffx.32157.1.S1_at--1141--1691Chr12:26354489..26354513 (25 bp)
ACCAAATAGCAGTTCCTAGCATAAC
LOC_Os12g42470
OsAffx.32157.1.S1_at--635--10691Chr12:26354375..26354399 (25 bp)
TTGCCAACCCAAATCTGAGCTTATG
LOC_Os12g42470
OsAffx.32157.1.S1_at--610--9471Chr12:26354362..26354386 (25 bp)
TCTGAGCTTATGGAAAAACACCTTC
LOC_Os12g42470
OsAffx.32157.1.S1_at--351--4511Chr12:26354322..26354346 (25 bp)
GCCGAAAAGAGTTGGCCCACTTGGT
LOC_Os12g42470
OsAffx.32157.1.S1_at--706--8311Chr12:26354309..26354333 (25 bp)
GGCCCACTTGGTATAAGAGGATGTC
LOC_Os12g42470
OsAffx.32157.1.S1_at--1080--2651Chr12:26354243..26354267 (25 bp)
AAGCCTTAGCCTTGACTGCAGCAGA
LOC_Os12g42470
OsAffx.32157.1.S1_at--206--10131Chr12:26354200..26354224 (25 bp)
TATGATGGTAGCTGCCACTCATTTC
LOC_Os12g42470
OsAffx.32157.1.S1_at--460--2011Chr12:26354184..26354208 (25 bp)
ACTCATTTCTGGTCCACAGCCATCA
LOC_Os12g42470
OsAffx.32157.1.S1_at--151--4211Chr12:26354129..26354153 (25 bp)
CCCCAACTCTCCTGGATATCATAAT
LOC_Os12g42470
OsAffx.32157.1.S1_at--318--9811Chr12:26354074..26354098 (25 bp)
TAACCTGACCAGCTTGAACATCCAG
LOC_Os12g42470
Target Sequence 
GTCGAGCATCTCTCTTACCAAATAGCAGTTCCTAGCATAACCGATGAATTCCAGTTTTTCCTTGGCCCAATCGGCAACCC
AGACCCCACAGAGTTCATTAATGGAGAAACCAACCGAATCCCATTTAGATTTGCCAACCCAAATCTGAGCTTATGGAAAA
ACACCTTCAAATCTTGGCCATCGGCCGAAAAGAGTTGGCCCACTTGGTATAAGAGGATGTCGGCTAGCAAAATGACCCAT
TGGGAAGAAATCGGCATATCTCAAGCCTTAGCCTTGACTGCAGCAGATATGGCAAAGGATGAGCCTATGATGGTAGCTGC
CACTCATTTCTGGTCCACAGCCATCAACGCTTTCCTCTTCTCTCAAGGACCGATGACCCCAACTCTCCTGGATATCATAA
TGATTACTGGCCTAGACATAACCTCATCGGCTAACCTGACCAGCTTGAACATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis