Browse Element(s) Details


OsAffx.32159.1.S1_at

Description tigr:9640.m04177
TID=OsAffx.32159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4252011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42480OsAffx.7866.1.S1_x_at11/1112+26358002..26358809hypothetical protein
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein
LOC_Os12g42530OsAffx.7867.1.S1_at11/1112+26387110..26388414hypothetical protein
LOC_Os12g42540NANA12+26391264..26391518RING-H2 finger protein ATL2I, putative
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32159.1.S1_at--91--2771Chr12:26384895..26384919 (25 bp)
AAGACTGAGGATTGCGCTGGATGTT
LOC_Os12g42520
OsAffx.32159.1.S1_at--782--8451Chr12:26384949..26384973 (25 bp)
TGGCCAAGTGCCCATTGTTCACTGT
LOC_Os12g42520
OsAffx.32159.1.S1_at--485--5691Chr12:26385028..26385052 (25 bp)
GACTTTGGGCTGTCACGGTTTGTGC
LOC_Os12g42520
OsAffx.32159.1.S1_at--44--10211Chr12:26385087..26385111 (25 bp)
TATTTCAGCTGGGATCAAAGGCACT
LOC_Os12g42520
OsAffx.32159.1.S1_at--423--8251Chr12:26385106..26385130 (25 bp)
GGCACTGTCGGATATATTCCTCCAG
LOC_Os12g42520
OsAffx.32159.1.S1_at--241--6771Chr12:26385284..26385308 (25 bp)
GTTACGGAATCCTGCTGCTTGAGAT
LOC_Os12g42520
OsAffx.32159.1.S1_at--736--5391Chr12:26385353..26385377 (25 bp)
GAAGCATCCGCAGCTATGTTGCAAC
LOC_Os12g42520
OsAffx.32159.1.S1_at--128--731Chr12:26385368..26385392 (25 bp)
ATGTTGCAACGGCTTATCCTGACAG
LOC_Os12g42520
OsAffx.32159.1.S1_at--940--7111Chr12:26385474..26385498 (25 bp)
GTCAGTTCTCAGAGTGGCGCTGCAA
LOC_Os12g42520
OsAffx.32159.1.S1_at--1155--8731Chr12:26385499..26385523 (25 bp)
TGTACAGAGGACTCCCCGAGAGCAA
LOC_Os12g42520
OsAffx.32159.1.S1_at--1102--1471Chr12:26385519..26385543 (25 bp)
AGCAAGGATGCTCACAGGATATGTC
LOC_Os12g42520
Target Sequence 
AAGACTGAGGATTGCGCTGGATGTTGCTGAAGCTCTCGATTACCTGCACCGCCATGGCCAAGTGCCCATTGTTCACTGTG
ATCTGAAGCCAAGCAATGTCCTTCTTGACAATGACATGGTCGCCCATGTAGGGGACTTTGGGCTGTCACGGTTTGTGCTG
GGAACAAACAACAATTCCATACAGTATTCTAGTATTTCAGCTGGGATCAAAGGCACTGTCGGATATATTCCTCCAGAATA
TGGAATGGGTGGTGAAATTTCAGTGGAGGGGGATGTCTACAGTTACGGAATCCTGCTGCTTGAGATGTTCACTGCAAAGA
GGCCAACAGATGATTTGTTTCAGGGAAGTAGAAGCATCCGCAGCTATGTTGCAACGGCTTATCCTGACAGGGCCATGGAG
ATTGTTGATCAAGCAATGTTGCAGCTTAAAGAGAAAGATATGTTTGAAAAGAAGACCGAAGGATGTATAATGTCAGTTCT
CAGAGTGGCGCTGCAATGTACAGAGGACTCCCCGAGAGCAAGGATGCTCACAGGATATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis