Browse Element(s) Details


OsAffx.32160.1.S1_at

Description tigr:9640.m04185
TID=OsAffx.32160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ubiquitin-specific protease-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4260011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein
LOC_Os12g42580NANA12+26415446..26415991transposon protein, putative, unclassified, expressed
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32160.1.S1_at--319--6411Chr12:26426823..26426847 (25 bp)
GATCTACAAGGCTGTCCTATTCTCA
LOC_Os12g42600
OsAffx.32160.1.S1_at--721--10571Chr12:26426868..26426892 (25 bp)
TTCTCTATATGCATGCCTTGAAGCT
LOC_Os12g42600
OsAffx.32160.1.S1_at--110--10711Chr12:26427108..26427132 (25 bp)
TTGCCCAGGCTGTAAAGAGCATCGC
LOC_Os12g42600
OsAffx.32160.1.S1_at--502--10031Chr12:26427149..26427173 (25 bp)
TAGACCTTTGGAGGCTACCGGAAAT
LOC_Os12g42600
OsAffx.32160.1.S1_at--963--10031Chr12:26427227..26427251 (25 bp)
TAGAGACATGTGTGGACTTCCCGGT
LOC_Os12g42600
OsAffx.32160.1.S1_at--1017--4251Chr12:26427247..26427271 (25 bp)
CCGGTTCATGATCTTGACCTTTCAA
LOC_Os12g42600
OsAffx.32160.1.S1_at--253--7611Chr12:26427289..26427313 (25 bp)
GGGCAACAGATTTCCAACCACTATC
LOC_Os12g42600
OsAffx.32160.1.S1_at--685--9211Chr12:26427301..26427325 (25 bp)
TCCAACCACTATCGACTGTATGCTA
LOC_Os12g42600
OsAffx.32160.1.S1_at--453--8031Chr12:26427349..26427373 (25 bp)
GGAGGTGGTCACTATACTGCATATG
LOC_Os12g42600
OsAffx.32160.1.S1_at--564--1771Chr12:26427593..26427617 (25 bp)
ACCGTCATGTGGGTCCTATAAGCGA
LOC_Os12g42600
OsAffx.32160.1.S1_at--674--5671Chr12:26427630..26427654 (25 bp)
GACATCGGCAGCTTATGTTCTTTTT
LOC_Os12g42600
Target Sequence 
GATCTACAAGGCTGTCCTATTCTCAAGGAGACCACAGGAGACATGTTCTCTATATGCATGCCTTGAAGCTTTTATAAAGG
AGGAACCGTTAGGCCCAGAAGACATGTGGTATTGCCCAGGCTGTAAAGAGCATCGCCAAGCTAGTAAGAAGTTAGACCTT
TGGAGGCTACCGGAAATCCTTATAATACACCTGAAAAGATTTTCATACAGTCGATATACCAAAAACAAGCTAGAGACATG
TGTGGACTTCCCGGTTCATGATCTTGACCTTTCAAAGTATATCGGTAGCAGGGGGCAACAGATTTCCAACCACTATCGAC
TGTATGCTATTAGTAATCACTATGGAAGCATGGGAGGTGGTCACTATACTGCATATGTTTATCATGAAGGTAAGAAAGGG
TGGTATGACTTTGATGACCGTCATGTGGGTCCTATAAGCGAGGAGAGTATAAAGACATCGGCAGCTTATGTTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis