Browse Element(s) Details


OsAffx.32170.1.S1_at

Description tigr:9640.m04277
TID=OsAffx.32170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thaumatin-like protein TLP7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4345011/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43430Os.49466.1.S1_at11/1112+26913303..26914097Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43440Os.25329.1.A1_at11/1112+26922547..26923293Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32170.1.S1_at--145--5711Chr12:26927285..26927309 (25 bp)
GACTACTTCGACCTGTCACTGATCG
LOC_Os12g43450
OsAffx.32170.1.S1_at--1031--2831Chr12:26927492..26927516 (25 bp)
AAGTACGAGCACGAGTGCCCGCCGA
LOC_Os12g43450
OsAffx.32170.1.S1_at--889--4531Chr12:26927508..26927532 (25 bp)
GCCCGCCGACGAAATACTCCAAGTT
LOC_Os12g43450
OsAffx.32170.1.S1_at--1017--3391Chr12:26927560..26927584 (25 bp)
CAGCTACGCCAAGGATGATCGGAGC
LOC_Os12g43450
OsAffx.32170.1.S1_at--962--711Chr12:26927574..26927598 (25 bp)
ATGATCGGAGCAGCACTTTCACCTG
LOC_Os12g43450
OsAffx.32170.1.S1_at--8--10331Chr12:26927590..26927614 (25 bp)
TTTCACCTGCCCTGCCGGAACAAAT
LOC_Os12g43450
OsAffx.32170.1.S1_at--440--2251Chr12:26927611..26927635 (25 bp)
AAATTACCAGATCGTCATGTGCCCT
LOC_Os12g43450
OsAffx.32170.1.S1_at--1068--1271Chr12:26927619..26927643 (25 bp)
AGATCGTCATGTGCCCTTAATTAAT
LOC_Os12g43450
OsAffx.32170.1.S1_at--297--8851Chr12:26927680..26927704 (25 bp)
TGATCTTGTGTGTTGATCACTACCA
LOC_Os12g43450
OsAffx.32170.1.S1_at--866--611Chr12:26927714..26927738 (25 bp)
ATGCGTGCATGCGTACGTGTTGTTC
LOC_Os12g43450
OsAffx.32170.1.S1_at--243--4991Chr12:26927720..26927744 (25 bp)
GCATGCGTACGTGTTGTTCAATATA
LOC_Os12g43450
Target Sequence 
GACTACTTCGACCTGTCACTGATCGACGGGTTCAACGTGCCGATGAGCTTCCAGCCGACGAGCAACGCGGCGCGGTGCGG
CGCCCGGCGGCGCGGGCCGAGCTGCGGCGTGGACATCACGGCGCAGTGCCTCCCCGAGCTGAAGGTGGCCGGAGGCTGCG
ACAGCGCGTGCGGCAAGTTCGGCGGCGACGCCTACTGCTGCCGGGGGAAGTACGAGCACGAGTGCCCGCCGACGAAATAC
TCCAAGTTCTTCAAGGACAAGTGCCCCGACGCGTACAGCTACGCCAAGGATGATCGGAGCAGCACTTTCACCTGCCCTGC
CGGAACAAATTACCAGATCGTCATGTGCCCTTAATTAATAATTAAGCTAATATAAGATGTGATAATAAGGGGTAGTGATC
TTGTGTGTTGATCACTACCATTACCATGCATGCGTGCATGCGTACGTGTTGTTCAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis