Browse Element(s) Details


OsAffx.32185.1.S1_x_at

Description tigr:9640.m04358
TID=OsAffx.32185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to mitochondrial protein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4422011/11Cell Division Protein AAA ATPase family, putative
LOC_Os12g442102/11Cell Division Protein AAA ATPase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32185.1.S1_x_at--354--9351Chr12:27393298..27393322 (25 bp)
TCGAGAACGCCTACCTTCCCCACGT
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--140--3391Chr12:27393386..27393410 (25 bp)
CAGCGCCGACTGGTCTGCCTACGAC
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--427--5233Chr12:27393531..27393555 (25 bp)
GAATACTACGCCTCCGTCGGCAAGG
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--42--7511Chr12:27393557..27393581 (25 bp)
GTGGAAACGCGGCTACCTGCTGTTC
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--506--8491Chr12:27393622..27393646 (25 bp)
TGGCAAACTTCCTAGACTACGGCGT
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--881--1751Chr12:27393652..27393676 (25 bp)
ACCTCGAGCTGACGGCAGTCAAGAG
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--90--9371Chr12:27393655..27393679 (25 bp)
TCGAGCTGACGGCAGTCAAGAGCAA
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--86--4091Chr12:27393656..27393680 (25 bp)
CGAGCTGACGGCAGTCAAGAGCAAC
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--193--3732Chr12:27393687..27393711 (25 bp)
CTACGGAGGCTGTTCATCGAGACCA
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--657--1451Chr12:27393802..27393826 (25 bp)
AGAAGATGACGCCACCTTGGGCCCG
LOC_Os12g44220
OsAffx.32185.1.S1_x_at--897--3591Chr12:27393817..27393841 (25 bp)
CTTGGGCCCGCGACGATGACGAGGA
LOC_Os12g44220
Target Sequence 
TCGAGAACGCCTACCTTCCCCACGTCCTCGCCGAGGGCCGCGCCGTCACCGTCCGCAACCGCCAGCGCCGCCTCTTCACC
AACAACCCCAGCGCCGACTGGTCTGCCTACGACGACGCCCGCGTCTGGAGCCACGTCAAGCTGGAGCACCCCTCCACCTT
CGCCACGCTCGCCATGGACCCCGTCCGGAAGCAGGAGATCATCGACGACCTCGACATGTTCCGCGACGGCAAGGAATACT
ACGCCTCCGTCGGCAAGGCGTGGAAACGCGGCTACCTGCTGTTCGGGCCACCCGGCACAGGCAAGTCCACCATGATCGCC
GCCATGGCAAACTTCCTAGACTACGGCGTCTACGACCTCGAGCTGACGGCAGTCAAGAGCAACACCGAGCTACGGAGGCT
GTTCATCGAGACCACCGGAAAGTCGATCATCGTCATCGAGGACATCGACTGCTCCATCGACCTCACCGGCAAGCGCAAGA
AGAAGAAAAAGGACAAGAAGAAGAAGAAGATGACGCCACCTTGGGCCCGCGACGATGACGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32185.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis