Browse Element(s) Details


OsAffx.3224.1.S1_at

Description tigr:9631.m01266
TID=OsAffx.3224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1336011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed
LOC_Os03g13340OsAffx.3223.1.S1_at11/113+7178091..7179239hypothetical protein
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified
LOC_Os03g13360OsAffx.3224.1.S1_at11/113+7188527..7189153hypothetical protein
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed
LOC_Os03g13390Os.48057.1.S1_at11/113+7208077..7210783NADH-dependent oxidoreductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3224.1.S1_at--529--4011Chr03:7188577..7188601 (25 bp)
CGTCCTCTTGGTAGGCACGGCGGCC
LOC_Os03g13360
OsAffx.3224.1.S1_at--956--3751Chr03:7188581..7188605 (25 bp)
CTCTTGGTAGGCACGGCGGCCGCCA
LOC_Os03g13360
OsAffx.3224.1.S1_at--967--4011Chr03:7188622..7188646 (25 bp)
CGTCGTGGCTCGTGGCACCAATGCC
LOC_Os03g13360
OsAffx.3224.1.S1_at--860--2591Chr03:7188662..7188686 (25 bp)
AACGCAACCGTGATGGCGCGCCGCG
LOC_Os03g13360
OsAffx.3224.1.S1_at--813--8391Chr03:7188756..7188780 (25 bp)
GGCGCAACACGCTGATGATCAGCTG
LOC_Os03g13360
OsAffx.3224.1.S1_at--929--2151Chr03:7188762..7188786 (25 bp)
ACACGCTGATGATCAGCTGGTGCCC
LOC_Os03g13360
OsAffx.3224.1.S1_at--370--9351Chr03:7188789..7188813 (25 bp)
TCGACAAGGACGAGTGCCACATCGC
LOC_Os03g13360
OsAffx.3224.1.S1_at--73--2231Chr03:7188792..7188816 (25 bp)
ACAAGGACGAGTGCCACATCGCCTG
LOC_Os03g13360
OsAffx.3224.1.S1_at--791--3511Chr03:7188943..7188967 (25 bp)
CATGAAGGTGTACCCTGACGGCAGC
LOC_Os03g13360
OsAffx.3224.1.S1_at--328--911Chr03:7188996..7189020 (25 bp)
AGGCGTCCGCGGGATGCTACCTCGT
LOC_Os03g13360
OsAffx.3224.1.S1_at--504--4851Chr03:7189011..7189035 (25 bp)
GCTACCTCGTGTGCAGCTACGGCGA
LOC_Os03g13360
Target Sequence 
CGTCCTCTTGGTAGGCACGGCGGCCGCCAGGCCAGCCACGTCCGCCGTCGTGGCTCGTGGCACCAATGCCACGGCGGCCG
CCGCCAACGCAACCGTGATGGCGCGCCGCGGCCGCTCCTCGCCGCTATCGACGGCGACGACGGAGGAGGAGCAGCAGTAC
ATCTGCTACCTCTGCCGCGGGCGCAACACGCTGATGATCAGCTGGTGCCCCCTCGACAAGGACGAGTGCCACATCGCCTG
CCTCTCGTCGCCGTCGTCGGCGTCGCGCTCCTCCTCCTCGTCTCCGCCGCGCGCGCTGCCTTTTTCCGCCGCCGACGACG
ATGGCGGCGACAACGGCCGGGGCGGGGGCCACGACGACTGCTACGTCATGAAGGTGTACCCTGACGGCAGCTGGGTCGTC
GTCGACGTGGTCAGCTGCCAGGCGTCCGCGGGATGCTACCTCGTGTGCAGCTACGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis