Browse Element(s) Details


OsAffx.32254.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=rpl16
TID=OsAffx.32254.1
CNT=1
FEA=DNA_19
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L16 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Ribosomal protein L16
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3413011/11Mitochondrial ribosomal protein S3, putative
LOC_Os12g3407011/11Mitochondrial ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34120OsAffx.19957.1.S1_at8/1112+20637962..20639692hypothetical protein
LOC_Os12g34130OsAffx.32254.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.32253.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.6.S1_s_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.1.S1_x_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.2.S1_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34140NANA12+20650665..20654319retrotransposon protein, putative, unclassified
LOC_Os12g34149OsAffx.32277.1.S1_x_at5/1112+20663671..20664024hypothetical protein
LOC_Os12g34160Os.47463.1.S1_x_at3/1112+20671468..20682583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34160Os.14491.2.S1_x_at2/1112+20671468..20682583transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0045333biological_processcellular respiration
GO:0005740cellular_componentmitochondrial envelope
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32254.1.S1_x_at--1077--4492Chr12:20645780..20645804 (25 bp)
GCGGAAGTATCCACTCGTAACGGAA
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--619--1052Chr12:20645809..20645833 (25 bp)
AGGTGTCAAAGTGCGGATCTCATAT
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--26--5332Chr12:20645845..20645869 (25 bp)
GAAGGGACGTGCTATATCCGAAACG
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--119--272Chr12:20645948..20645972 (25 bp)
ATATGGCACCAAAAGTTGTAGAGCT
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--932--5894Chr12:20645968..20645992 (25 bp)
GAGCTGGTCGTCTTTCATATCGAGC
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--240--10153Chr12:20645985..20646009 (25 bp)
TATCGAGCCATTGAAGCAGCGCGTC
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--590--7192Chr12:20646007..20646031 (25 bp)
GTCGGGCTACAATCGGGCAATTCCA
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--70--3173Chr12:20646025..20646049 (25 bp)
AATTCCATCGTGCTATGAGCGGACA
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--47--1352Chr12:20646078..20646102 (25 bp)
AGAGTTCTCGCAGATCTTCCTATTA
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--1153--3712Chr12:20646148..20646172 (25 bp)
CTACGGGTTGGATTGCTCGTGTGTC
LOC_Os12g34130
OsAffx.32254.1.S1_x_at--965--7392Chr12:20646168..20646192 (25 bp)
GTGTCCACGGGACAAATCCCATTTG
LOC_Os12g34130
Target Sequence 
GCGGAAGTATCCACTCGTAACGGAATTTCAGGTGTCAAAGTGCGGATCTCATATAGTCAAAATAAGAAGGGACGTGCTAT
ATCCGAAACGTACGAAATATAGTAAATATAGTAAATGCAGATGTAGTAGGGGTTGCGAACCGGATGGTACACAACTTGGT
TTTGGAAGATATGGCACCAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTACAAT
CGGGCAATTCCATCGTGCTATGAGCGGACAATTCCGAAGAAATTGTAAGATATGGGTAAGAGTTCTCGCAGATCTTCCTA
TTACGGGGAAACCCGCAGAAGTTCGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGA
CAAATCCCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32254.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis