Browse Element(s) Details


OsAffx.3238.1.S1_at

Description tigr:9631.m01363
TID=OsAffx.3238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1423010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3238.1.S1_at--328--6251Chr03:7700748..7700772 (25 bp)
GATGGTCACCGTATCACTATCTCAC
NONE
OsAffx.3238.1.S1_at--731--2031Chr03:7700733..7700757 (25 bp)
ACTATCTCACGTTCGGATGGCTGAT
LOC_Os03g14230
OsAffx.3238.1.S1_at--290--4531Chr03:7700219..7700699 (25 bp)
GCCGCCCGTCTCACTGAAACAAAGG
LOC_Os03g14230
OsAffx.3238.1.S1_at--834--4471Chr03:7700178..7700202 (25 bp)
GCCTGTTGTTGATCACGTTGTGCAT
LOC_Os03g14230
OsAffx.3238.1.S1_at--965--4031Chr03:7700163..7700187 (25 bp)
CGTTGTGCATCGTACCACATGGAGA
LOC_Os03g14230
OsAffx.3238.1.S1_at--1153--8052Chr08:20103653..20103677 (25 bp)
GGAGAACCATCCGAAAAACCTCAGA
NONE
OsAffx.3238.1.S1_at--196--731Chr03:7700105..7700129 (25 bp)
ATGATTTTCTCCATCAAGTTTGCTG
LOC_Os03g14230
OsAffx.3238.1.S1_at--59--1211Chr03:7700089..7700113 (25 bp)
AGTTTGCTGCCCCAATCGCATTTTG
LOC_Os03g14230
OsAffx.3238.1.S1_at--451--531Chr03:7700075..7700099 (25 bp)
ATCGCATTTTGGTCCTTTAGTTCAA
LOC_Os03g14230
OsAffx.3238.1.S1_at--1070--1211Chr03:7700058..7700081 (24 bp)
AGTTCAAAGTTGTTCATCCGCTCGG
LOC_Os03g14230
OsAffx.3238.1.S1_at--819--8051Chr03:7699759..7699783 (25 bp)
GGAGACCTCAACAAGCATCTGTTAA
LOC_Os03g14230
Target Sequence 
GATGGTCACCGTATCACTATCTCACGTTCGGATGGCTGATGGACAATCTCCTTCCCTATCAACCCTAGCTATCGCCGCCC
GTCTCACTGAAACAAAGGCCAGGAATGATCAAGGGCCTGTTGTTGATCACGTTGTGCATCGTACCACATGGAGAACCATC
CGAAAAACCTCAGAACACAAAGCATCTATGATTTTCTCCATCAAGTTTGCTGCCCCAATCGCATTTTGGTCCTTTAGTTC
AAAGTTGTTCATCCGCTCGGAAAGGAGACCTCAACAAGCATCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis