Browse Element(s) Details


OsAffx.3308.1.S1_at

Description tigr:9631.m02388
TID=OsAffx.3308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2450011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3308.1.S1_at--847--8231Chr03:13945560..13945584 (25 bp)
GGCAACTGGTTTTACTCTGAATCGT
LOC_Os03g24500
OsAffx.3308.1.S1_at--122--9011Chr03:13945577..13945601 (25 bp)
TGAATCGTGAGAGCAGCGTCTTTGA
LOC_Os03g24500
OsAffx.3308.1.S1_at--227--5031Chr03:13945619..13945643 (25 bp)
GCAGTAGGTGCCAAGTCTGTGGACA
LOC_Os03g24500
OsAffx.3308.1.S1_at--738--10771Chr03:13945905..13945929 (25 bp)
TTGGAGCGAACTGAGCGGGTTCTTC
LOC_Os03g24500
OsAffx.3308.1.S1_at--896--9191Chr03:13945928..13945952 (25 bp)
TCCAACCGGCACAACATTTACTGTT
LOC_Os03g24500
OsAffx.3308.1.S1_at--8--8291Chr03:13946315..13946339 (25 bp)
GGCTTACAAAGATCGCGGAACAGTT
LOC_Os03g24500
OsAffx.3308.1.S1_at--937--5471Chr03:13946332..13946356 (25 bp)
GAACAGTTCTGATTAAACGGCCAAG
LOC_Os03g24500
OsAffx.3308.1.S1_at--474--10471Chr03:13946372..13946396 (25 bp)
TTACGTTTCACGGAGAGGCATCGAT
LOC_Os03g24500
OsAffx.3308.1.S1_at--902--451Chr03:13946403..13946427 (25 bp)
ATCTCAGACCTTAAGGAGGCTTCCA
LOC_Os03g24500
OsAffx.3308.1.S1_at--1067--7831Chr03:13946420..13946553 (25 bp)
GGCTTCCACGGGTAAAGACGCAACG
LOC_Os03g24500
OsAffx.3308.1.S1_at--309--3391Chr03:13946555..13946579 (25 bp)
CAGCGATTTTTGCATTCTGCGGCGG
LOC_Os03g24500
Target Sequence 
GGCAACTGGTTTTACTCTGAATCGTGAGAGCAGCGTCTTTGAGGAGAACAAACAATTATGCAGTAGGTGCCAAGTCTGTG
GACAAGAAGGTTCGGTAGTTGGATTGGAGCGAACTGAGCGGGTTCTTCCAACCGGCACAACATTTACTGTTGTTGGTGAG
GCTTACAAAGATCGCGGAACAGTTCTGATTAAACGGCCAAGAGAACTTGGACGGTTTTACGTTTCACGGAGAGGCATCGA
TCAGATTATCTCAGACCTTAAGGAGGCTTCCACGGGTAAAGACGCAACGGCAGCGATTTTTGCATTCTGCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis