Browse Element(s) Details


OsAffx.3314.1.S1_at

Description tigr:9631.m02413
TID=OsAffx.3314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2474011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24699NANA3+14056781..14056894NA
LOC_Os03g24710OsAffx.25210.1.S1_x_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24710OsAffx.25210.1.S1_at11/113+14066100..14067185Terpene synthase, N-terminal domain containing protein
LOC_Os03g24720OsAffx.13008.1.S1_at10/113+14068370..14071309hypothetical protein
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein
LOC_Os03g24740OsAffx.3314.1.S1_at11/113+14078892..14079206hypothetical protein
LOC_Os03g24750NANA3+14081180..14081383hypothetical protein
LOC_Os03g24760OsAffx.25211.1.S1_x_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24760OsAffx.25211.1.S1_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3314.1.S1_at--154--3291Chr03:14079142..14079166 (25 bp)
CAAACAACACGGCATGCTCGGTGAT
LOC_Os03g24740
OsAffx.3314.1.S1_at--299--7471Chr03:14079110..14079134 (25 bp)
GTGTGGGTGTACTGCTACCTGAACC
LOC_Os03g24740
OsAffx.3314.1.S1_at--355--9951Chr03:14079095..14079119 (25 bp)
TACCTGAACCGACGAGCAAAGCCAA
LOC_Os03g24740
OsAffx.3314.1.S1_at--432--3291Chr03:14079079..14079103 (25 bp)
CAAAGCCAACAATGATGCAGCCGTA
LOC_Os03g24740
OsAffx.3314.1.S1_at--847--8851Chr03:14079067..14079091 (25 bp)
TGATGCAGCCGTACATGAACGCCGG
LOC_Os03g24740
OsAffx.3314.1.S1_at--220--4091Chr03:14079024..14079048 (25 bp)
CGACGACAGCACCATTAGCATGAGC
LOC_Os03g24740
OsAffx.3314.1.S1_at--985--131Chr03:14079011..14079035 (25 bp)
ATTAGCATGAGCTGCCACGTCAACC
LOC_Os03g24740
OsAffx.3314.1.S1_at--277--3351Chr03:14078996..14079020 (25 bp)
CACGTCAACCTGAACATGGGCGAAG
LOC_Os03g24740
OsAffx.3314.1.S1_at--787--2951Chr03:14078974..14078998 (25 bp)
AAGGCCGACATGATTGGCAAAGTCT
LOC_Os03g24740
OsAffx.3314.1.S1_at--794--2971Chr03:14078947..14078971 (25 bp)
AATGTTCGGCGAAGCACGGCAAGTT
LOC_Os03g24740
OsAffx.3314.1.S1_at--294--8231Chr03:14078930..14078954 (25 bp)
GGCAAGTTCTGCAAAGACCAAACAT
LOC_Os03g24740
Target Sequence 
CAAACAACACGGCATGCTCGGTGATGGCACTGGTGTGGGTGTACTGCTACCTGAACCGACGAGCAAAGCCAACAATGATG
CAGCCGTACATGAACGCCGGGATGATGAGAAGCACCACCGACGACAGCACCATTAGCATGAGCTGCCACGTCAACCTGAA
CATGGGCGAAGGCCGACATGATTGGCAAAGTCTAAAATGTTCGGCGAAGCACGGCAAGTTCTGCAAAGACCAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis