Browse Element(s) Details


OsAffx.3357.1.S1_s_at

Description tigr:9631.m02823
TID=OsAffx.3357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2899011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28969OsAffx.2602.1.S1_at6/113+16398365..16400882hypothetical protein
LOC_Os03g28969Os.5300.1.S1_at1/113+16398365..16400882hypothetical protein
LOC_Os03g28980Os.49781.1.S1_x_at9/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28980Os.49781.1.S1_at7/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28990OsAffx.3357.1.S1_s_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g28990Os.51900.1.S1_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29000NANA3+16415531..16415863hypothetical protein
LOC_Os03g29010OsAffx.25936.1.S1_s_at6/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29010OsAffx.25936.7.S1_s_at5/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29010OsAffx.25936.2.S1_x_at5/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29020Os.10827.1.S1_x_at8/113+16426789..16430606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29020Os.46055.2.S1_x_at4/113+16426789..16430606transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3357.1.S1_s_at--306--8351Chr03:16413396..16413420 (25 bp)
GGCGGCACGCGGAGTCGATCCGGGA
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--701--1151Chr03:16413408..16413432 (25 bp)
AGTCGATCCGGGAGGCGCGGAGCAT
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--876--4111Chr03:16413480..16413504 (25 bp)
CGCAGAACGCGCTGGAGGACGTACT
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--523--1831Chr03:16413486..16413510 (25 bp)
ACGCGCTGGAGGACGTACTGGACCA
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--276--5451Chr03:16413514..16413538 (25 bp)
GAACCCGATGGTGGACATGCTCCGG
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--1074--4631Chr03:16413602..16413626 (25 bp)
GCGTACGCCGTGTCGTCGCTAGCGT
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--502--9331Chr03:16413810..16413834 (25 bp)
TCGCCGGGCAGATCGCGTTCTACGT
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--1079--9311Chr03:16413822..16413846 (25 bp)
TCGCGTTCTACGTCAGGTCGGCCAT
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--792--10571Chr03:16413827..16413851 (25 bp)
TTCTACGTCAGGTCGGCCATCCAGG
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--182--891Chr03:16413858..16413882 (25 bp)
AGGCCATCGACAAGATCTTCGCCAG
LOC_Os03g28990
OsAffx.3357.1.S1_s_at--1077--511Chr03:16413863..16413887 (25 bp)
ATCGACAAGATCTTCGCCAGCGTCG
LOC_Os03g28990
Target Sequence 
GGCGGCACGCGGAGTCGATCCGGGAGGCGCGGAGCATGGCGGACGGGAAGGAGCTGGAGCGCGCGAGGACGAGGCTGGTG
GAGGCGCAGAACGCGCTGGAGGACGTACTGGACCAGGCGAACCCGATGGTGGACATGCTCCGGGAGGAGCTCCTGCAGCT
TCTGCGGCTGATGGAGACGCAGGAGGCGTACGAGCGGGCGGGGCGGGCGTACGCCGTGTCGTCGCTAGCGTCCCACGACC
GGCAGCGGTTCGCCGCCCGCGGCGACGCGGAGGGCGTGCGGCTCTTCGCGACGCCGCGGATGGACGCGTACCTGGAGCAG
GCGTGGCGGTTCGACGAGGACCCCGGCGGCGCGGCGCTGCCGTCGGCGGAGGAGGACGTGAGGCAGGAGGTCGCCGCCAA
CCCGCTGGCGCCCGTCGCCGGGCAGATCGCGTTCTACGTCAGGTCGGCCATCCAGGCGCTGCAGGCCATCGACAAGATCT
TCGCCAGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3357.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis