Browse Element(s) Details


OsAffx.3365.1.S1_s_at

Description tigr:9631.m02900
TID=OsAffx.3365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative small nuclear ribonucleoprotein polypeptide G
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2974011/11small nuclear ribonucleoprotein G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29680Os.49170.1.S1_at11/113+16875049..16877259EARLY flowering 4 protein, putative, expressed
LOC_Os03g29690OsAffx.13112.1.S1_at11/113+16879732..16880450hypothetical protein
LOC_Os03g29710OsAffx.16205.1.S1_at2/113+16887490..16890376hypothetical protein
LOC_Os03g29710OsAffx.25292.1.S1_at1/113+16887490..16890376hypothetical protein
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3365.1.S1_s_at--901--9531Chr03:16896201..16896225 (25 bp)
TCTACTCCCGTCATGAGCCGATCGG
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--638--2671Chr03:16897847..16897871 (25 bp)
AAGCTGAATGCAAACCGTGTAATTG
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--42--1791Chr03:16897860..16897884 (25 bp)
ACCGTGTAATTGTTGGTACGCTCCG
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--645--6991Chr03:16897875..16897899 (25 bp)
GTACGCTCCGTGGATTCGATCAGTT
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--800--3271Chr03:16897918..16897942 (25 bp)
CAACACGGTAGAGGTCAATGGAAAT
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--544--10771Chr03:16898118..16898142 (25 bp)
TTGAGGCATTGGAGCCAGTGCCCAA
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--578--1111Chr03:16898148..16898172 (25 bp)
AGTGACTCCCGTGGCATATTCCTGA
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--1072--4171Chr03:16898155..16898179 (25 bp)
CCCGTGGCATATTCCTGATTCAGTA
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--604--1971Chr03:16898203..16898227 (25 bp)
ACTGATGTATATGCTGTTGATGTTC
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--767--6651Chr03:16898218..16898242 (25 bp)
GTTGATGTTCTTGTTGTACCTTGTC
LOC_Os03g29740
OsAffx.3365.1.S1_s_at--1040--6971Chr03:16898233..16898257 (25 bp)
GTACCTTGTCCTTAACTGATGTGTG
LOC_Os03g29740
Target Sequence 
TCTACTCCCGTCATGAGCCGATCGGGGCAGCCCCCGGATCTCAAGAAGTACATGGACAAGAAGCTCCAGATCAAGCTGAA
TGCAAACCGTGTAATTGTTGGTACGCTCCGTGGATTCGATCAGTTTATGAATTTGGTGGTGGACAACACGGTAGAGGTCA
ATGGAAATGACAAGACTGATATTGGAATGGTGGTTGTCAGGGGGAACAGTGTTGTGATGATTGAGGCATTGGAGCCAGTG
CCCAAATCCCAGTGACTCCCGTGGCATATTCCTGATTCAGTAGCTATAGAGCTGGTAGCAAGAAAACTGATGTATATGCT
GTTGATGTTCTTGTTGTACCTTGTCCTTAACTGATGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3365.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis