Browse Element(s) Details


OsAffx.3380.1.S1_x_at

Description tigr:9631.m03079
TID=OsAffx.3380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3134011/11Protein transport protein SEC61 gamma subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3380.1.S1_x_at--451--5651Chr03:17814311..17814335 (25 bp)
GACAGCATTTGCCTCGTCAAGCACT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--232--2151Chr03:17814310..17814334 (25 bp)
ACAGCATTTGCCTCGTCAAGCACTG
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--313--1951Chr03:17814290..17814313 (24 bp)
ACTGCCATAAGCCCGACCGCAAAGA
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--733--1211Chr03:17814183..17814207 (25 bp)
AGTTCACCAAGGTGGTGGCGTGTAT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--562--9671Chr03:17814180..17814204 (25 bp)
TCACCAAGGTGGTGGCGTGTATGCT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--294--8771Chr03:17814163..17814187 (25 bp)
TGTATGCTGCAGAAGTATCAGACGT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--837--5331Chr03:17814152..17814176 (25 bp)
GAAGTATCAGACGTACCAAGGTGGT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--77--391Chr03:17814147..17814171 (25 bp)
ATCAGACGTACCAAGGTGGTGGCGT
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--829--9971Chr03:17814139..17814163 (25 bp)
TACCAAGGTGGTGGCGTGTATGCTG
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--92--8491Chr03:17814128..17814152 (25 bp)
TGGCGTGTATGCTGCAGAAGTATCA
LOC_Os03g31340
OsAffx.3380.1.S1_x_at--907--4751Chr03:17814118..17814142 (25 bp)
GCTGCAGAAGTATCAGACGCATTGA
LOC_Os03g31340
Target Sequence 
GACAGCATTTGCCTCGTCAAGCACTGCCATAAGCCCGACCGCAAAGAGTTCACCAAGGTGGTGGCGTGTATGCTGCAGAA
GTATCAGACGTACCAAGGTGGTGGCGTGTATGCTGCAGAAGTATCAGACGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3380.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis