Browse Element(s) Details


OsAffx.3422.1.S1_s_at

Description tigr:9631.m03602
TID=OsAffx.3422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37520OsAffx.25399.1.S1_at11/113+20770570..20771257hypothetical protein
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein
LOC_Os03g37554Os.40288.1.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37554Os.41248.4.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37570Os.9559.1.S1_at11/113+20792579..20794424expressed protein
LOC_Os03g37570OsAffx.3422.1.S1_s_at11/113+20792579..20794424expressed protein
LOC_Os03g37580Os.24640.1.A1_at11/113+20796877..20801512Modifier of rudimentary protein, expressed
LOC_Os03g37610Os.10827.1.S1_x_at10/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37610Os.46055.2.S1_x_at6/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37620NANA3+20816860..20817222hypothetical protein
LOC_Os03g37630OsAffx.25936.1.S1_s_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.1.S1_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.7.S1_s_at7/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.2.S1_x_at4/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.5.S1_x_at3/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3422.1.S1_s_at--850--10031Chr03:20793253..20793277 (25 bp)
TAGATCCTGTTAACTACTGCGAGAT
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--349--2531Chr03:20793242..20793266 (25 bp)
AACTACTGCGAGATTCGGACAAGAA
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--251--10671Chr03:20793187..20793211 (25 bp)
TTCCAATTGAGGTTGGGTCCGAGGA
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--914--1451Chr03:20793150..20793174 (25 bp)
AGAAGATGCTGCTCCGGTCGCTAAG
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--575--7231Chr03:20793134..20793158 (25 bp)
GTCGCTAAGGAGGATCAGGGCCATT
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--31--4451Chr03:20793115..20793139 (25 bp)
GCCATTCAGAGGCTATCCAGGATGA
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--364--671Chr03:20793094..20793118 (25 bp)
ATGAAGATGCTGACCACCACCAAGT
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--339--1711Chr03:20793079..20793103 (25 bp)
ACCACCAAGTGAATGACCCCGCTGA
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--367--7491Chr03:20793023..20793047 (25 bp)
GTGGTGACGTCTAGTTCTCAGGATT
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--201--5671Chr03:20792981..20793005 (25 bp)
GACATTATTGGGTGTGCCACTTCAT
LOC_Os03g37570
OsAffx.3422.1.S1_s_at--772--431Chr03:20792958..20792982 (25 bp)
ATCTAAGCCGGCTGGCCCAAAGAAG
LOC_Os03g37570
Target Sequence 
TAGATCCTGTTAACTACTGCGAGATTCGGACAAGAAAGGGCAAGGATGTTGAAGGTGGAAGCTCTGTTCCAATTGAGGTT
GGGTCCGAGGAAGAAGTTAACGCAGAAGATGCTGCTCCGGTCGCTAAGGAGGATCAGGGCCATTCAGAGGCTATCCAGGA
TGAAGATGCTGACCACCACCAAGTGAATGACCCCGCTGATGATGATGGTGACGAGGATGACAGGGAGTCTGTGGTGACGT
CTAGTTCTCAGGATTGTGAGGTTAATCTAGAAGACATTATTGGGTGTGCCACTTCATCTAAGCCGGCTGGCCCAAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3422.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis