Browse Element(s) Details


OsAffx.3448.1.S1_at

Description tigr:9631.m03811
TID=OsAffx.3448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3964011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3448.1.S1_at--551--9751Chr03:21979852..21979876 (25 bp)
TAATATTGTTGGAATTGCTTACGCC
LOC_Os03g39640
OsAffx.3448.1.S1_at--1006--4891Chr03:21979836..21979860 (25 bp)
GCTTACGCCATGGATATGCTTGAGT
LOC_Os03g39640
OsAffx.3448.1.S1_at--553--8151Chr03:21979661..21979685 (25 bp)
GGAAATTGCACATATGCCCACATAC
LOC_Os03g39640
OsAffx.3448.1.S1_at--274--4551Chr03:21979651..21979670 (20 bp)
GCCCACATACTTTGTTCCAGATTCA
LOC_Os03g39640
OsAffx.3448.1.S1_at--1117--2971Chr03:21979382..21979406 (25 bp)
AATGTCTGTTTGGAACTTGCTAAGA
LOC_Os03g39640
OsAffx.3448.1.S1_at--236--10631Chr03:21979353..21979377 (25 bp)
TTCGCATCAGGCAGGTTCATATGGC
LOC_Os03g39640
OsAffx.3448.1.S1_at--238--271Chr03:21979335..21979359 (25 bp)
ATATGGCAGTGGTCCTCAACGAATA
LOC_Os03g39640
OsAffx.3448.1.S1_at--175--5751Chr03:21977114..21977138 (25 bp)
GACGGAACATTTGACGTTGATGCAA
LOC_Os03g39640
OsAffx.3448.1.S1_at--1114--271Chr03:21977081..21977105 (25 bp)
ATAGACCACCTATCTGAAGAACTTG
LOC_Os03g39640
OsAffx.3448.1.S1_at--446--7691Chr03:21976363..21976387 (25 bp)
GGGTCATCAGTATGAGACGGTGTCT
LOC_Os03g39640
OsAffx.3448.1.S1_at--11--8731Chr03:21976343..21976367 (25 bp)
TGTCTGGTTTTGTCTGTGAATCCTT
LOC_Os03g39640
Target Sequence 
TAATATTGTTGGAATTGCTTACGCCATGGATATGCTTGAGTATGTTGAAGAGGTTGAGAAGTTGAAGGAGATTACTGTGA
AGGAAATTGCACATATGCCCACATACTTTGTTCCAGATTCAATGTCTGTTTGGAACTTGCTAAGAGAGTTTCGCATCAGG
CAGGTTCATATGGCAGTGGTCCTCAACGAATATGGTGGGACTATTGGTATTGTAACATTAGAAGATGTTGTGGAAGAAAT
AGTTGGAGAAATCTTCGATGAGAATGATTCAAAGGAGGAAATCCAGAAGAAAACAGGTTATATAGTGATGCTGGATGACG
GAACATTTGACGTTGATGCAAATACATCAATAGACCACCTATCTGAAGAACTTGGTGTTAAAATACCAGAGGGTCATCAG
TATGAGACGGTGTCTGGTTTTGTCTGTGAATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis